Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq107681 154 1e-32 seq58313 132 4e-26 >seq107681 Length=5071 Score = 154 bits (170), Expect = 1e-32 Identities = 490/752 (65%), Gaps = 12/752 (2%) Strand=Plus/Minus Query 12858 TTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATAT 12917 ||||||| || || | || ||||||||||| || || ||||| |||| || || || Sbjct 4510 TTTTTTGGTAATCTCCTACCCTTTTTTCAAAGAAATTGGTTTTGCCTTGTAGGGATATCA 4451 Query 12918 TTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTA 12977 | ||||||||||| || || || | | || ||| | | || | ||| || Sbjct 4450 TCTCCATAAAATCAAACGGGTTAGATGCGCCGTACACTTTAGGATAACCCAGTTCGCCTA 4391 Query 12978 ACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTA 13037 || | | |||||| |||||||| ||||| || |||| || | | |||||| ||||||| Sbjct 4390 ACCAACGGTCAGCCACAAACTCAATGTATTGGCTCATCAATTTAGCGTTCATCCCTATTA 4331 Query 13038 ATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTA 13097 | ||| |||| || || || | ||| | |||||| || || || || ||| ||| | Sbjct 4330 ACGATACCGGCAATGCGTCGGTAATAAATTCTTTTTCAATCTCTACCGCGTCGGTAATAA 4271 Query 13098 TGTCTCTTATTACGTTCTCTAAT-GGAGGATTTGATAG-ATGCTTAAACATCATACATGC 13155 | | | | | | |||| | | | ||| || || | || | || || || Sbjct 4270 TTTTGGTAACTGC-TTCTGTGCTCAGTTTATTCTCCAGCATACCGTAA-AGCAGGCAGGC 4213 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 ||| || ||||| | |||||||| | ||| || ||||| ||| || | || || Sbjct 4212 AAATTCGCAGTGTGAACCTTCATCGCGCGATATCAGTTCGTTACTAAAGGTCAATCCGGG 4153 Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC-GaaaaaaaTATTC 13274 ||| || || |||||||| | ||| || |||| | || | | ||| ||||| || || | Sbjct 4152 CATCAGGCCACGTTTTTTTAACCAGAAGATAG-AACAGAAGCTCCCTGAAAAGAAAATGC 4094 Query 13275 CTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCC 13334 ||||||| || ||||| |||| ||| | || || | || | || || |||| Sbjct 4093 CTTCAACAGCCGCAAATGCTACCAAACGCTCGGCAAAGGTGCCGTTGTT------GATCC 4040 Query 13335 ACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATA 13394 | ||||| | ||| || | || || || || | || | |||| || | Sbjct 4039 AGCGCAGCGCCCACTCTGCCTTCTTTTGCACACATGGAATCGTATCAACCGCGTGGAACA 3980 Query 13395 AATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTG 13454 || || |||||| |||| ||| ||||||||||||| || || | |||| Sbjct 3979 AACGATCTTTTTCAACCGGGTCTTTAATGTAAGTATCTATCAGTAGCGCGTAGGTCTCTG 3920 Query 13455 AATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAA 13514 | || || || |||||| || || ||||| ||||| || | || || | || || | Sbjct 3919 AGTGGATGTTCTCCATCATGATCTGAAAACCGTAAAAGCAACGGGCTTCGGGTAATTGCA 3860 Query 13515 CTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaa 13574 | ||| || | | || | ||||||||| || || || || || || ||||||| Sbjct 3859 CCTCGCTCATGAAGTTCACAGCAAGGTTTTCGTTCACAATACCATCGCTGGCGGCAAAAA 3800 Query 13575 aaGCAAGTATGTGCTTAATAAAttttttttCG 13606 |||| || |||||| ||| || | ||| ||| Sbjct 3799 AAGCCAGGATGTGCGAAATGAAATGTTTCTCG 3768 >seq58313 Length=1260 Score = 132 bits (146), Expect = 4e-26 Identities = 305/450 (68%), Gaps = 16/450 (4%) Strand=Plus/Minus Query 12858 TTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATAT 12917 ||||||| || |||| || | ||| ||||||||||| ||||| || | || ||| || Sbjct 620 TTTTTTGGTAATCGCCCACGCGTTTCTCAAAAAAGTTGGTTTTGCCCTGTAGCGATATCA 561 Query 12918 TTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTA 12977 | ||||||||||| || |||||| | || || ||| | | || | ||| | Sbjct 560 TCTCCATAAAATCAAACGGATTTGATGCACCGTATACTTTCGGATAGCCCAGTTCGCCCA 501 Query 12978 ACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTA 13037 | ||||||| || |||||||| || ||||| |||| | | |||||| ||||||| Sbjct 500 GCCATCTGTCGGCTACAAACTCAATATACTGACTCATCAGTTTGGCGTTCATACCTATTA 441 Query 13038 ATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTA 13097 | ||| |||| || || | | ||| | |||||||| || || || || ||| | Sbjct 440 ACGATACCGGCAGCGCGTCGCTGATAAATTCCTTTTCTATCTCTACCGCGTCTTTAATAA 381 Query 13098 TGTCTCTTATTACGTTCTCTAATG--GAG---GATTTGATAGATGCTTAAACATCATACA 13152 | | | | || ||| | || || | ||| |||| | ||| || || Sbjct 380 T---TTTGGTGACCGCCTC-AGTGCTCAGCTTGTTTTCCAGCATGC-TGTACAGCAGGCA 326 Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT--TGAAAATGTTAGA 13210 ||||| || |||||| | |||||||| | ||| |||||||| ||||| || || Sbjct 325 GGCAAATTCGCAGTGCGAACCTTCATCGCGCGATATCAGCTCGTTACTGAAA--GTCAGC 268 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCCGaaaaaaa 13269 || ||||| | || |||||||| | ||| || |||| |||| || ||||||||| || Sbjct 267 CCTGGCATCAATCCGCGTTTTTTCAGCCAGAAGATAG-AGCAGAAACTACCCGAAAAGAA 209 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAA 13299 || |||||||| || ||||| || | ||| Sbjct 208 GATGCCTTCAACCGCAGCAAATGCCACCAA 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430398305849802