Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq109371 333 9e-87 seq109454 132 2e-26 seq41057 109 2e-19 seq36499 102 3e-17 >seq109371 Length=32687 Score = 333 bits (368), Expect = 9e-87 Identities = 411/563 (73%), Gaps = 42/563 (7%) Strand=Plus/Plus Query 30873 TCACCCCATTGCTTGAACAGGAACGGCACATCTGCGGCAGCGCACTGGTCGCGCAGCGAC 30932 || ||||| |||||||| | |||| ||| || || ||||||||||||||||| | Sbjct 5510 TCGCCCCACTGCTTGAAGTGAAACGCCACGCTGGCCGCCGCGCACTGGTCGCGCAGGGCG 5569 Query 30933 CGAGCCCAGTCGGGATGCATCGGGCGGGCGCCGTGGCCGCTTTCGCCGCCGGCGATCACC 30992 || |||||| ||| |||||||| || ||||| | ||||| ||||| ||| |||| | | Sbjct 5570 CGGGCCCAGCTGGGGTGCATCGGACGCGCGCCAGGCCCGCTCTCGCCTCCGACGATGATC 5629 Query 30993 CAATGTAGGCCGCCGTCGGCTGGTCGGCGTAGTTCGAACTGGCGCTTGCCGCCGTGCGTG 31052 || || | |||||||||||| || ||| || || | |||||||||||| ||||||||| Sbjct 5630 CAGTGAATGCCGCCGTCGGCCGGCTTGCGCAGCTCCATCTGGCGCTTGCCTCCGTGCGTG 5689 Query 31053 CGGAAGTTGCCGGTTGGCTCGCTGTAGATGTGGAAGCGCAGGTCAACCGACCCAAGCAGC 31112 || ||||||| || ||||||||| ||| ||||||||| ||||| || | ||| | |||| Sbjct 5690 CGCCAGTTGCCCGTGGGCTCGCTGAAGAGGTGGAAGCGGAGGTCCACAGGCCCCATCAGC 5749 Query 31113 GGCTCCATCGACAGGAAGCGTACGCGCGCGGGTACTGCGAGCAGCTTCGGGATGTCGCGG 31172 |||||||| |||||| || |||||||| || | || ||||||||||||||||||||| Sbjct 5750 GGCTCCATGCTCAGGAACCGCACGCGCGCCGGCGCGGCCAGCAGCTTCGGGATGTCGCGG 5809 Query 31173 TCGGCCTCTTCCTGGTTGACGATCGTCGCGCCGATCCAGACGTT------ATCCG--GCA 31224 ||||| ||| |||||||||||| || ||||||||||| ||||| | || || Sbjct 5810 TCGGCTTCTGCCTGGTTGACGACTGTGGCGCCGATCCAAACGTTGGGCCAAGGCGCTGCC 5869 Query 31225 GTC-------GGTCGATTCC---------GATCTCG--CGTAGCA------TCGCCG--- 31257 ||| | | ||| || | |||| ||| ||| ||| || Sbjct 5870 GTCGTCCACGGCTTGATGCCCGGGTTGTAGTGCTCGACCGTCGCAGAGGCCTCGGCGATC 5929 Query 31258 ------CGA-CGTTGCCGATGCGCTTCGTCAGCAACAACCAGTCGAGGTTTGGCGTGTCG 31310 ||| ||||||||||||||||||||| || | |||||| || | || || | Sbjct 5930 ATGGGCCGAGCGTTGCCGATGCGCTTCGTCAACAGGAGCCAGTCCAGATACGGTGTCGCT 5989 Query 31311 GCGATCAGGCGGAACAGGTCCGCGCGCCACGCCGGATCGACAGTGTTGTCGAAAACGTCG 31370 |||||||||| ||| || | || ||||||| ||| || ||||||||| ||||| Sbjct 5990 GCGATCAGGCAGAAGAGATGCGAGCGCCACTCCGACGGCACCTCGTTGTCGAACACGTCA 6049 Query 31371 GCGAGCGACGCGCAGAACACGCG 31393 || ||||| |||||||| ||||| Sbjct 6050 GCCAGCGAGGCGCAGAAGACGCG 6072 >seq109454 Length=55839 Score = 132 bits (146), Expect = 2e-26 Identities = 106/128 (83%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 30873 TCACCCCATTGCTTGAACAGGAACGGCACATCTGCGGCAGCGCACTGGTCGCGCAGCGAC 30932 || |||||||||||||||||||||||||| | ||||| |||||||||||||||| Sbjct 48010 TCGCCCCATTGCTTGAACAGGAACGGCACGCCGGCGGCCTCGCACTGGTCGCGCAGGTCT 47951 Query 30933 CGAGCCCAGTCGGGATGCATCGGGCGGGCGCCGTGGCCGCTTTCGCCGCCGGCGATCACC 30992 || |||||| |||| ||||||| || ||| ||||||||||||||||||| ||||||| Sbjct 47950 CGGGCCCAGGCGGGGAGCATCGGCCGCGCGTGGTGGCCGCTTTCGCCGCCGCAGATCACC 47891 Query 30993 CAATGTAG 31000 || || || Sbjct 47890 CAGTGCAG 47883 >seq41057 Length=259 Score = 109 bits (120), Expect = 2e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 2988 GGCGCCATGCAGGCCGGGAAAACGATGGTGCTGGAAGCCGGGATGAAGTACCAGGCCATC 3047 ||||| ||| | ||||| ||||||||||||| | ||| | || | || ||| Sbjct 32 GGCGCGATGAATGCCGGCCGCCCGATGGTGCTGGAGGGCGGCACCAAATGGGAGCAGATC 91 Query 3048 ACGATGAATCCCGGTGATGTCCAGTTGCTGGAGACGCGGGCATTCAACATCGAGGAAATC 3107 || | ||||| | || | ||| |||| || |||| || ||| ||||||||||| Sbjct 92 ACCTTCAATCCTGAAGACGCGCAGATGCTCGAATCGCGCGCCTTCTCGGTCGAGGAAATC 151 Query 3108 TGCCGCTGGTATCGCGTTCCGCCGTTTATGGTCGGCCACAGCGAGAAATCGACAAGCTGG 3167 || |||| | |||| ||||| || ||||||||||||| ||||| |||| |||||| Sbjct 152 TGTCGCTTCTTCGGCGTACCGCCCTTCATGGTCGGCCACACAGAGAAGACGACGAGCTGG 211 Query 3168 GGAACTGGGATCGAACAACAGACGCTCGGCTTTTTGACATTCACCCTG 3215 || || ||| | ||||| |||| |||| ||| || |||| | ||| Sbjct 212 GGCACGGGGCTGGAACAGCAGATCCTCGCCTTCCAGAAATTCGCGCTG 259 >seq36499 Length=515 Score = 102 bits (112), Expect = 3e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 30873 TCACCCCATTGCTTGAACAGGAACGGCACATCTGCGGCAGCGCACTGGTCGCGCAGCGAC 30932 || |||||||||||||| || || ||||| | || || ||||| || ||||| || || Sbjct 391 TCGCCCCATTGCTTGAAAAGAAATGGCACGCCGGCAGCCGCGCATTGATCGCGGAGTGAT 332 Query 30933 CGAGCCCAGTCGGGATGCATCGGGCGGGCGCCGTGGCCGCTTTCGCCGCCGGCGATCACC 30992 |||||||| || || |||||||| || ||||| | |||| |||||| ||| ||| ||| Sbjct 331 CGAGCCCACTCTGGGTGCATCGGCCGTGCGCCATCGCCGGATTCGCCCCCGACGACGACC 272 Query 30993 CAAT 30996 |||| Sbjct 271 CAAT 268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175214720945374