Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq107681 156 1e-32 seq70823 149 1e-30 seq106734 111 4e-19 seq58313 89.7 1e-12 >seq107681 Length=5071 Score = 156 bits (172), Expect = 1e-32 Identities = 397/595 (67%), Gaps = 17/595 (3%) Strand=Plus/Plus Query 268696 AGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGC 268755 |||| | ||||| ||| |||| ||| | | || ||| ||| |||||| ||| | | Sbjct 3633 AGATCGCTTTGTAATACTTCCTATAAAATACCCTGCTATTTGGGAGATGTATAAAAAATC 3692 Query 268756 CGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAA 268815 | || |||||||| | |||||| | || ||||| | ||| | | | ||||| | Sbjct 3693 GGAAGCCAGCTTTTGGACAGCCGAAGAAATTGACCTGTCGGACGACCTGAAACATTGGGA 3752 Query 268816 AAATTTAAAACCAGAAGAAAGAAGATTT-ATATCTTATATTCTTGCGTTTTTTGCAGTTA 268874 | | || || | || | || |||| || || | || || || |||||||| | | Sbjct 3753 AGCCATGAACCCGGGCGAGA-AACATTTCATTTCGCACATCCTGGCTTTTTTTGCCGCCA 3811 Query 268875 GTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTG 268934 | |||||||| || |||||||| || | | ||| ||| ||||| || | || | Sbjct 3812 GCGATGGTATTGTGAACGAAAACCTTGCTGTGAACTTCATGAGCGAGGTGCAATTACCCG 3871 Query 268935 AAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACA 268994 ||||| | || |||||||| || ||||| || || || || || ||||||| ||| Sbjct 3872 AAGCCCGTTGCTTTTACGGTTTTCAGATCATGATGGAGAACATCCACTCAGAGACCTACG 3931 Query 268995 GTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTA 269054 ||| | ||||||||||| || | || || |||||| | ||| ||| | Sbjct 3932 CGCTACTGATAGATACTTACATTAAAGA----CCCGGTTGAAAAAGA-TCGTTTGTTCCA 3986 Query 269055 TGAG-----AACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109 | | || || |||||| ||| || | || ||||| ||| ||||| || Sbjct 3987 CGCGGTTGATACGATTCCATGTGTGCAAAAGAAGGCAGAGTGGGCGCTGCGCTGGATCAA 4046 Query 269110 CGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTT 269169 | | || | | || | ||| | || || || ||||| ||||| ||||| || ||||| Sbjct 4047 CAACGGCAC-CTTTGCCGAG--CGTTTGGTAGCATTTGCGGCTGTTGAAGGCATTTTCTT 4103 Query 269170 TTC-GGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAA 269228 ||| ||| ||| || ||||||| ||||| || ||| | ||||| ||||| ||||| | Sbjct 4104 TTCAGGGAGCTTCTG-TTCTATCTTCTGGTTAAAAAAACGTGGCCTGATGCCCGGATTGA 4162 Query 269229 CTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG 269283 | || ||||||| ||||| | || ||||||| ||||||||| || || || Sbjct 4163 CCTTTAGTAACGAACTGATATCGCGCGATGAAGGTTCACACTGCGAATTTGCCTG 4217 >seq70823 Length=785 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || | || | ||||| ||||||||||| || || || Sbjct 349 ATTCCTCCACAGAGACGAAGGACCAAGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCT 290 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || || | || || || |||||||| || || | ||| || |||||| Sbjct 289 GAAAGAGTGCAGCCATCCTGAAGCTGCTTGCCAGCAAAGATGAGACACTGCTGGTCAGGA 230 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || | ||||||||| ||||| ||||| | | |||||| | || || Sbjct 229 GGGATGCCTTCCTTGTTCTGAATCTTGGCTTTCACATTGCCAATGGTATCAGTTGGCTCA 170 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||| |||||||||||| || || || || || ||||||||||| || Sbjct 169 ACCTCTAATGTAATAGTCTTCCCTGTGAGGGTCTTGACAAATATCTGTAT 120 >seq106734 Length=403 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || ||||| ||||||||||| || || || | ||||| || | Sbjct 236 AGATGAAGGGTGGACTCCTTCTGGATATTATAGTCCGAGAGCGTGCGCCCGTCCTCCAAC 177 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || || || || || | ||||| || || || || ||||| || ||||||||| Sbjct 176 TGCTTGCCGGCGAAGATCAGACGTTGTTGGTCGGGGGGGATACCTTCCTTGTCCTGAATC 117 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || || || || || | || || || |||||||| || || || ||||| || Sbjct 116 TTGGCCTTGACGTTGTCGATAGTGTCCGAAGACTCTACCTCCAGCGTGATTGTCTTGCCC 57 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| |||||||| Sbjct 56 GTGAGCGTCTTCACAAAGATCTGCAT 31 >seq58313 Length=1260 Score = 89.7 bits (98), Expect = 1e-12 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 269069 TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGCGCCTTACGGA 269128 |||||| || ||| | |||||||| ||| ||||| ||| | || | || | || Sbjct 116 TGTGTGCAGAAGAAAGCCGAATGGGCGCTGCGCTGGATCAACAACGGCAA-CTTTGCCGA 174 Query 269129 GAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCT 269188 | | || || || ||||| || || ||||| || ||||||||||| ||| | || Sbjct 175 GC--GTTTGGTGGCATTTGCTGCGGTTGAAGGCATCTTCTTTTCGGGTAGTTTCTGCTCT 232 Query 269189 ATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATA 269248 ||||| ||| |||| ||| | || | |||||||| | |||||| |||||| ||||| Sbjct 233 ATCTTCTGGCTGAAAAAACGCGGATTGATGCCAGGGCTGACTTTCAGTAACGAGCTGATA 292 Query 269249 AGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG 269283 | || ||||||| |||||||| || || || Sbjct 293 TCGCGCGATGAAGGTTCGCACTGCGAATTTGCCTG 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149757930377308