Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq81106 122 4e-23 seq107328 113 2e-20 seq111000 107 8e-19 seq107962 86.0 3e-12 >seq81106 Length=13242 Score = 122 bits (134), Expect = 4e-23 Identities = 210/300 (70%), Gaps = 14/300 (5%) Strand=Plus/Minus Query 8310 CGCCGGGCGCGCTCGAGCGGATCCGTCGTT-TCCGCGTAGCTGGCTTCGAACTCTTCACG 8368 || || |||||||||| ||| || |||| | | | ||||| ||| |||||||| | || Sbjct 5434 CGGCGCGCGCGCTCGACCGGGTC-GTCGGTGTGCCCGTAGGAGGCCTCGAACTCAGCCCG 5376 Query 8369 GGCAAACGGGGTAAGCGCCAGGGCCTGGCG---CAGTTCCTC-----GC-CACGGTCCCG 8419 ||| || || || || | | || ||| || | ||| || | |||| || Sbjct 5375 GGCGAAGGGCGTCAGGTCAA---CCATGCGGGCCAACTGCTCCGACTGCTCGGGGTCGCG 5319 Query 8420 CGCGACGCGGAACAGGTTCACCACGTCCCCGTCGAGGTCGTTGTAGACCTCGGCGTAGCT 8479 | ||||||||| | ||| || || || ||| | ||||||||| |||||| || Sbjct 5318 CAGGACGCGGAAGACGTTGACGACCTCGTCGTGCACGTCGTTGTAAACCTCGCTGTGCGC 5259 Query 8480 GCGGGCCTTCCGCAGCAGGACAGAAGCCGCGCCGCCGAAAGGCTCGATGTAGGTGTGGTG 8539 |||| |||| ||||||| || ||||| || |||||||| ||||||| |||| ||||| Sbjct 5258 GCGGTCCTTGTGCAGCAGCACCGAAGCTGCTCCGCCGAACGGCTCGACGTAGCAATGGTG 5199 Query 8540 GGGCGCGAGGTGCTGGATGATCCACGGGGCGAGCAGCCACTTGCCGCCGTGGTAGCGGAG 8599 || || | | | ||||||||| ||||| | ||||||||||||||||||| || Sbjct 5198 GGTCGGAAAGAAACCCACGATCCACGGTGCGAGGCGGAACTTGCCGCCGTGGTAGCGCAG 5139 Score = 84.2 bits (92), Expect = 9e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 3997 TCGCTGATGTCCTGCAGCCGCTCGACGCGTACGTCGGTGATCTCAAGCAGGATGCGGGAG 4056 |||||||| ||||||| ||||||||||| |||||||||| ||| |||||||||||| | Sbjct 7435 TCGCTGATCGCCTGCAGGCGCTCGACGCGCACGTCGGTGACCTCGAGCAGGATGCGGCTG 7376 Query 4057 GCCCAACGCGGCAT 4070 ||||| || |||| Sbjct 7375 GCCCAGCGGTGCAT 7362 >seq107328 Length=16160 Score = 113 bits (124), Expect = 2e-20 Identities = 173/248 (70%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 11164 GCCGCCGAGCAGTTGCATGTTGCCGTTGATGTCGACCACTACCTCGGTGCTGTAGTGGTC 11223 |||||| ||||||||||| | | || ||| | ||||||| ||||| ||| Sbjct 15752 GCCGCCCAGCAGTTGCATCTGGTCGGCAATG---------ATCTCGGTGGTGTAGGTGTC 15802 Query 11224 CTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGA 11283 || ||| |||| | |||||||||||||||| |||| |||||||| |||||| || Sbjct 15803 CTTGCCTTCCTTGTCCTGCCACTTGCGGGTCTTCAGGCGGCCTTCGACGTAGACGGGGCG 15862 Query 11284 GCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTG 11343 |||||| |||||||| | || ||||| |||| ||| | || || || ||||| Sbjct 15863 GCCCTTCTTCAGGTATTCGCCAGCAATTTCAGCCAAACGGTCGTTGAAAACCACGCGGTG 15922 Query 11344 CCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTCCAGCTTTCGCTAGTGGC 11403 ||| ||||| ||||| | | |||||||| || |||||| | | | ||||| Sbjct 15923 CCATTCGGTCTCTTCCTGGCGTTCGCCGGTCTCGCGGTTCTTCCAGTTGCGGGTGGTGGC 15982 Query 11404 CAGACTGA 11411 ||| |||| Sbjct 15983 CAGGCTGA 15990 >seq111000 Length=9260 Score = 107 bits (118), Expect = 8e-19 Identities = 110/142 (77%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 8451 TCGAGGTCGTTGTAGACCTCGGCGTAGCTGCGGGC--CTTCCGCAGCAGGACAGAAGCCG 8508 |||||||||||||||||||||| || | |||| ||| |||||||||| || |||| Sbjct 336 TCGAGGTCGTTGTAGACCTCGG--TACCGCAGGGCTGCTTTTGCAGCAGGACCGATGCCG 279 Query 8509 CGCCGCCGAAAGGCTCGATGTAGGTGTGGTGGGGCGCGAGGTGCTGGATGATCCACGGGG 8568 |||| ||||| || |||| |||| | ||| | || | ||| ||||||||| || | Sbjct 278 CGCCACCGAATGGTTCGACGTAGATCCCGTGCGCCGGAAAATGCGAGATGATCCATGGCG 219 Query 8569 CGAGCAGCCACTTGCCGCCGTG 8590 ||||| |||| ||||||||||| Sbjct 218 CGAGCCGCCATTTGCCGCCGTG 197 >seq107962 Length=16137 Score = 86.0 bits (94), Expect = 3e-12 Identities = 137/195 (70%), Gaps = 9/195 (5%) Strand=Plus/Plus Query 33773 TGACGTTCACCAGTGTGTCCGGCGCG---AGCATCGAGGCAATCATCATCTACAAGGACA 33829 |||||||| || | || | ||||| | ||||||||| ||| | |||| |||| Sbjct 3794 TGACGTTCTCCGGCCTGGTCAGCGCGCCCACCATCGAGGCGATCGCGCTGTACATCGACA 3853 Query 33830 CCGGTACCGAGTCCTCCAGCCCGCTGATTGCATTCATCGACACGGCTACCGGCCTGCCGA 33889 |||| |||| || | |||| || || || |||||||| || || |||||||||| Sbjct 3854 CCGGCGTCGAGGCCACGTCGGCGCTCATCGCCTTTATCGACACCGCCACTGGCCTGCCGA 3913 Query 33890 TCACCCCCAACGGC---GGCGACATCATCGTCACCTGGGATAACGGCACCAACAAAATCT 33946 | | ||| |||| || | || ||||||||||| |||||| ||||||| |||| Sbjct 3914 T---CGCCAGCGGCATGACCGGCGGCACGGTCACCTGGGACAACGGCGCCAACAAGATCT 3970 Query 33947 TCAAGGTCTGAGCGC 33961 || ||||||||| Sbjct 3971 TCGCCCTCTGAGCGC 3985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208216628918116