Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_006938.1 Length=63649 Score E Sequences producing significant alignments: (Bits) Value seq14176 136 2e-27 seq111010 105 3e-18 >seq14176 Length=1367 Score = 136 bits (150), Expect = 2e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 7915 CTCCTGGTCGTTGACGAGTGTTCGATGGTCGACATGCAGGTCGGTCAAGACCTCCTCTCC 7974 ||| | ||| | ||||| || |||||||| ||| | | |||| | ||||| || || Sbjct 875 CTCATCGTCATCGACGAATGCTCGATGGTGGACGAGGATCTCGGCAAGGACCTGCTGTCG 816 Query 7975 TTCGACGTCCCCATCCTCGTGCTCGGCGACCCGGCCCAGCTCCCGCCCGTCATGGGAGGT 8034 |||| | | |||||||||||||| || |||||||| ||||| |||| ||| || Sbjct 815 TTCGGCAAGAAGACGCTCGTGCTCGGCGATCCCGCCCAGCTGCCGCCGGTCAAGGGTGGC 756 Query 8035 GGCTTCTTCACGGAGGCCAAGCCGGACATGATGCTGACGGACATCCACCGCCAGGCCAAG 8094 ||||||||||| |||||| |||||||| ||||||||||| | | || ||||||||| Sbjct 755 GGCTTCTTCACCGAGGCCGAGCCGGACGTGATGCTGACGCAGGTGCATCGCCAGGCCGCC 696 Query 8095 GACAACCCCATCATC 8109 ||||| || ||| || Sbjct 695 GACAATCCGATCGTC 681 >seq111010 Length=53734 Score = 105 bits (116), Expect = 3e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 9399 CTCTGGGAGATGATCATGCGGTCCACGTGGGACTGGGCCGAGCCCGGCACCCTGTTCATC 9458 || ||||| | ||||||| ||||| | ||| |||||||||||| || ||| | Sbjct 29696 CTGTGGGACCAGGTCATGCGCTCCACCTACGACCACGCCGAGCCCGGCGTGCTCTTCCTG 29755 Query 9459 GACCAGATCAACCGCATGAACAATCTCAAGTACTGCGAGACCATCGCCGCCACCAATCCC 9518 |||| |||||| || ||||| || | ||||||||||| ||||| || |||||||| Sbjct 29756 GACCGCATCAACAGCGACAACAACCTGCACTACTGCGAGACGATCGCGGCGACCAATCCT 29815 Query 9519 TGCGGCGAGCAGCCCCTCCCACCGTACGGTGCCTGCCTCTTGGGCTCCTTCAACCT 9574 |||| |||||| || || || || || || |||| | |||||||| || |||| Sbjct 29816 TGCGCCGAGCAACCGCTTCCGCCCTATGGCTGCTGCTGCCTGGGCTCCATCGACCT 29871 Score = 102 bits (112), Expect = 3e-17 Identities = 143/200 (72%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 9127 CCTCCGGGCCGCTCTCCTTCATGCAGATCTACGACTCCGTGTGCAAGTGCGTCGCCAGCT 9186 ||||||||||| || | ||||| | | |||| | ||| || || | ||| Sbjct 29373 CCTCCGGGCCGATCAGTTACATGCGCGTGTTCGACCGCAGTTGCGAGACGGTGGAGAGCG 29432 Query 9187 CTGGCCACCGCCGTGGCGCGCAGATGGGCGTCCTCCGAGTGGACCACCCGGACATCGAGG 9246 | ||| |||||| ||||||||||||||||| || || |||||||| |||||||||| Sbjct 29433 CCGGCAGCCGCCGCGGCGCGCAGATGGGCGTGCTGCGCTGCGACCACCCCGACATCGAGG 29492 Query 9247 AGTTCATTCGCGCCAAGCACAACGAGGACAACCTCACCGGGTTCAACACCTCCATCGCCA 9306 ||||| | ||||||| |||| | | |||| | ||||||| |||||||| | Sbjct 29493 CCTTCATCCACGCCAAG---GACGAAGGCGACCTGCGCAACTTCAACATCTCCATCGGCG 29549 Query 9307 TCACCGACCGCTTCATGGAG 9326 | |||||| |||||||||| Sbjct 29550 TGACCGACGTCTTCATGGAG 29569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203276133671210