Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq107681 109 6e-19 >seq107681 Length=5071 Score = 109 bits (120), Expect = 6e-19 Identities = 564/889 (63%), Gaps = 30/889 (3%) Strand=Plus/Minus Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 ||||||| ||||| | || |||||||| || ||||| || || |||| | ||||| Sbjct 4510 TTTTTTGGTAATCTCCTACCCTTTTTTCAAAGAAATTGGTTTTGCCTTGTAGGGATATCA 4451 Query 21243 ATTCCATAAAATCAAATGGATTTTCAGATTTAA---ATATTTTATTACAACCCAGTTCTG 21299 |||||||||||||| || || |||| | | |||| | |||||||||| Sbjct 4450 TCTCCATAAAATCAAACGGGTT---AGATGCGCCGTACACTTTAGGATAACCCAGTTCGC 4394 Query 21300 ATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGA 21359 ||| | | || || ||||| || || ||||| | ||| |||| | ||||| || | Sbjct 4393 CTAACCAACGGTCAGCCACAAACTCAATGTATTGGCTCATCAATTTAGCGTTCATCCCTA 4334 Query 21360 TCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAA 21419 | || ||| || | || | || | ||| |||||| || || || || || Sbjct 4333 TTAACGATACCGGCAATGCGTCGGTAATAAATTCTTTTTCAATCTCTACCGCGTCGGTAA 4274 Query 21420 TTATATTTATTA-TCCTAGATGTACTAGGGGGATACAATA--ATTGTTTAAACATCAAAC 21476 | || || | | | || ||| || | || | | || |||| || | Sbjct 4273 TAATTTTGGTAACTGCTTC-TGTGCTCAGTTTATTCTCCAGCATACCGTAAAG--CAGGC 4217 Query 21477 ATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAAC 21536 | ||||| || || || |||||||||| | ||| | ||| ||| ||| || || | Sbjct 4216 AGGCAAATTCGCAGTGTGAACCTTCATCGCGCGATATCAGTTCGTTACTAAAGGTCAATC 4157 Query 21537 CGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCC-TGAAAAGAAA 21595 ||||||| | || | ||||||||||| || || || || | ||||| |||||||||| Sbjct 4156 CGGGCATCAGGCCACGTTTTTTTAACCAGAAGATAGAA-CAGAAGCTCCCTGAAAAGAAA 4098 Query 21596 ATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGT-AGATTCTTTATCCAA 21654 ||||| ||||| || |||||||| || || || || | | || || || ||||| Sbjct 4097 ATGCCTTCAACAGCCGCAAATGCTACCAAACGCTCGGCAAAGGTGCCGTTGTTGATCCA- 4039 Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714 || ||||| | |||||| | || | ||| ||| ||||||| || | Sbjct 4038 -GCGCA-----GCGCCCACTCTGCCTTCTTTTGCACACATGGAATCGTATCAACCGCGTG 3985 Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 || | | ||| ||||||| | || | ||| || | Sbjct 3984 GAACAAACGATCTTTTTCAACCGGGTCTTTAATGTAAGTATCTATCAGTAGCGCGTAGGT 3925 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 || || || || || || ||| |||||||| |||||||| || | || || | | Sbjct 3924 CTCTGAGTGGATGTTCTCCATCATGATCTGAAAACCGTAAAAGCAACGGGCTTCGGGTAA 3865 Query 21835 TTGAACCTCG-GAATAAAATCGTT--GAGCCAAGTTTTCATTTACTATTCCATCACTGGC 21891 ||| |||||| || || ||| ||| | |||||| || || || ||||| ||||| Sbjct 3864 TTGCACCTCGCTCATGAA---GTTCACAGCAAGGTTTTCGTTCACAATACCATCGCTGGC 3808 Query 21892 GGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAAT-TTTTTCC 21950 ||||||||| |||| || | || |||| | ||| ||| || || || Sbjct 3807 GGCAAAAAAAGCCAGGATGTGCGAAATGAAATGTTTCTCG-CCCGGGTTCATGGCTTCCC 3749 Query 21951 AATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCT 22010 ||| | | || | || | || | |||||| | |||||||||||| || | | Sbjct 3748 AATGTTTCAGGTCGTCCGACAGGTCAATTTCTTCGGCTGTCCAAAAGCTGGCTTCCGATT 3689 Query 22011 TTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 |||||||||| ||| ||| || ||| |||| |||| ||||||||| Sbjct 3688 TTTTATACATCTCCCAAATAGCAGGGTATTTTATAGGAAGTATTACAAA 3640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531161451239240