Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq107681 163 4e-35 seq18333 89.7 6e-13 >seq107681 Length=5071 Score = 163 bits (180), Expect = 4e-35 Identities = 553/849 (65%), Gaps = 13/849 (2%) Strand=Plus/Minus Query 33011 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 33070 |||||||||| || || || | |||||| || ||||| ||||| |||| | ||||| Sbjct 4510 TTTTTTGGTAATCTCCTACCCTTTTTTCAAAGAAATTGGTTTTGCCTTGTAGGGATATCA 4451 Query 33071 TTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 33130 | ||||| ||||||||||| || | | || | ||| | | |||| ||| | Sbjct 4450 TCTCCATAAAATCAAACGGGTTAGATGCGCCGTACACTTTAGGATAACCCAGTTCGCCTA 4391 Query 33131 TCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 33190 | | | || || || || || || ||| |||||| || | ||||| ||||| | Sbjct 4390 ACCAACGGTCAGCCACAAACTCAATGTATTGGCTCATCAATTTAGCGTTCATCCCTATTA 4331 Query 33191 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 33250 || || | || | |||| |||||||| |||||| |||||| || || |||| Sbjct 4330 ACGATACCGGCAATGCGTCGGTAATAAATTCTTTTTCAATCTCTACCGCGTCGGTAATAA 4271 Query 33251 TAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAA-ATGTTTAAACATCAAACATGCG 33309 | |||| | |||| ||| || || | | || || | || || || Sbjct 4270 TTTTGGTAACTGCTTCTGTGCTCAGTTTATTCTCCAGCATACCGTAA-AGCAGGCAGGCA 4212 Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369 || |||||||| ||| || || | || |||||||| ||| || | ||||||| Sbjct 4211 AATTCGCAGTGTGAACCTTCATCGCGCGATATCAGTTCGTTACTAAAGGTCAATCCGGGC 4152 Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429 || |||||||| ||||| | ||| || || ||| ||| || |||||||| || ||| Sbjct 4151 ATCAGGCCACGTTTTTTTAACCAGAAGATAGAACAGAAGCTCCCTGAAAAGAAAATGCCT 4092 Query 33430 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTT 33489 || || || ||||| || | | | ||| || | | || ||| || ||||| Sbjct 4091 TCAACAGCCGCAAATGCTACCAAACGCTCGGCAAAGGTGCCGTTGT--TG-ATCCAGCGC 4035 Query 33490 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 33549 | ||||| || |||||||||| ||||| || ||||| || | || | || | | Sbjct 4034 AGCGCCCACTCTGCCTTCTTTTGCACACATGGAATCGTATCAACCGCGTGGAACAAACGA 3975 Query 33550 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33609 | ||||||| ||||||| |||||||| |||| || || | || || || Sbjct 3974 TCTTTTTCAACCGGGTCTTTAATGTAAGTATCTATCAGTAGCGCGTAGGTCTCTGAGTGG 3915 Query 33610 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG-TAATCTGTACTTC 33668 ||||| || || |||||||| ||||| || || | || |||| |||| || || || Sbjct 3914 ATGTTCTCCATCATGATCTGAAAACCGTAAAAGCAACGGGCTTCGGGTAAT-TGCACCTC 3856 Query 33669 TGTACAAAATCGTTCC--GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33726 | || |||| || | ||||| ||||| || || || ||||| |||||||| Sbjct 3855 GCTCATGAA--GTTCACAGCAAGGTTTTCGTTCACAATACCATCGCTGGCGGCAAAAAAA 3798 Query 33727 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC-AATCATTGAT 33785 |||| | || || |||| ||| ||| | || ||| | |||| ||| || | Sbjct 3797 GCCAGGATGTGCGAAATGAAATGTTTCTCGCCCGG-GTTCATGGCTTCCCAATGTTTCAG 3739 Query 33786 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33845 || | || | || | |||||| |||||||||| || || | ||||||||||| Sbjct 3738 GTCGTCCGACAGGTCAATTTCTTCGGCTGTCCAAAAGCTGGCTTCCGATTTTTTATACAT 3679 Query 33846 GTTCCAGAT 33854 | ||| || Sbjct 3678 CTCCCAAAT 3670 >seq18333 Length=334 Score = 89.7 bits (98), Expect = 6e-13 Identities = 171/252 (68%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 || ||| || || || || ||| ||| ||| ||| | |||| ||||| ||||| || Sbjct 292 TAAACCAATACCGCCGGCGCTTTGAGAAATTTTAGCGGTTTGTTTCAACGTATCATATAT 233 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63610 ||| || || || ||||| ||||| | | || |||||| |||||||| | | Sbjct 232 ACCATCAATACTGTCATCCTTCATGGTTAATAAAAAACATGATGACATTTGTGGCTTAGG 173 Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 || || |||||||| |||||||| | |||||||||||||| || | || | Sbjct 172 GGTGCCTGCATTAAACAAGGTAGGGGTTGCGTGCGTAAACCAACGCTCGCTCATCAGGTG 113 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||| || | || || || |||||| || ||| || || || | |||||||| || Sbjct 112 GTAGGTTTTGATGGCGCTTTCAATATCCGCTTTATGGATCCCAACCGATACACGCATAAA 53 Query 63731 CATGTGCTGAGG 63742 || ||||| || Sbjct 52 CAAATGCTGCGG 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622081295605160