Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq101184 737 0.0 seq47985 190 6e-44 seq108448 140 9e-29 >seq101184 Length=7008 Score = 737 bits (816), Expect = 0.0 Identities = 779/1026 (76%), Gaps = 14/1026 (1%) Strand=Plus/Minus Query 43339 CCAGAAGTCTGCGCCGGCCCACCGGTCGGACCGGAGGTTCATGCCGATCTCGACGTTGAG 43398 |||||| || ||||||||||| ||||||| || ||| || |||||||||||||||||| Sbjct 5180 CCAGAACTCGGCGCCGGCCCAACGGTCGGCACGAAGGGACAGGCCGATCTCGACGTTGAG 5121 Query 43399 GTGCTTCGCGATGAACTGCTGGAACGATCCGTCAGTCTTGGTGCGGATCTTGTTGAGCTG 43458 |||||| |||| |||||||||| | | ||||| |||||| |||| | ||||| | Sbjct 5120 GTGCTTGGCGAGGAACTGCTGGTAGGTGCCGTCGGTCTTGCCGCGGTTGCGCTTGAGGTT 5061 Query 43459 GTCCTCCAGCCATTCGGCACTGACCGACCGCCCGAGATTCGGATTCGTGATGTAGTAGTT 43518 ||| |||||||||| ||| || || |||| || || || ||||||||| |||| Sbjct 5060 GTCGACCAGCCATTCCAGCGAGACGGAACGGCCGATGTTGGGGTTGGTGATGTAGAAGTT 5001 Query 43519 GGCCGGATCGAGGTAGGCTTTCGACTTCACCATCTCTTCCGGAAACTCGTACAGCACGCC 43578 |||| ||||||||||| || ||| ||| | || || ||||||||||| | ||| Sbjct 5000 CGCCGCGTCGAGGTAGGCCTTGCTGGTCAGCATGGCCTCGGGGAACTCGTACAGGATGCC 4941 Query 43579 GAGCGACTTCCGGTCGACGATTTTGCCGTCACGCACGTCGCGGTAGTACTGCAACTTCTC 43638 || | ||| ||||||||||| |||||||| ||||||||||| |||| | | || Sbjct 4940 CAGGGTCTTGCGGTCGACGATCTTGCCGTCGCGCACGTCGCGCCAGTAGTCGAGGCGGTC 4881 Query 43639 TTTGAACACACCGGCCGGCGGCTCGTCGCTTTGCGTTGTCAGGATGATGACCCACCCTTC 43698 ||||| || ||||| || | |||||||| || || |||||| ||||||||| ||||| Sbjct 4880 CTTGAAGACGCCGGCGGGGGCTTCGTCGCTCTGGGTGGTCAGGTAGATGACCCAGCCTTC 4821 Query 43699 ATCCCGCGACACCTGGCCTCCGGTCGCCTCCATGAACATCGCTTCTGCGTTCGCCCTCTT 43758 || || |||||||| ||| || || |||||||| || | ||||| | || ||| Sbjct 4820 GTCGCGGCTGACCTGGCCGCCGAGGGCTTCGATGAACATGGCGGCGGCGTTGGACCGCTT 4761 Query 43759 GCCGAAGACCCAGTGCTCGTCGATAAGAATCTTTCCTGACTTCTTGCCCGATACCGTGTC 43818 |||||||| |||| | ||||||| ||| ||||| || ||||||||||| || |||||||| Sbjct 4760 GCCGAAGAGCCAGAGTTCGTCGACAAGGATCTTGCCGGACTTCTTGCCGGAGACCGTGTC 4701 Query 43819 AGTGTCGGCCGCAACCACCTTCAACGACGCT----CGACTGACGCGGTGCGTTATCGTGC 43874 ||||| || || || ||||| || ||| || ||| |||||| || || || | Sbjct 4700 GGTGTCAGCAGCGACAACCTT----GAGGCTGTTGCGGTTGAGGCGGTGGGTGATGGTCC 4645 Query 43875 GGATGTGATCTTGGACATGAAACAGCTCGGACAGCTCTGCATCGGCCCGGATCATCCCCG 43934 |||||||||| ||||| || |||||||||| |||||| | || | || | ||| | | Sbjct 4644 GGATGTGATCCTGGACGTGGAACAGCTCGGTCAGCTCCGGGTCCTCGCGCACCATGGCGG 4585 Query 43935 CCGCCGGTTTGAAGCTGTTGTCCGCGACCTCCTTCGTCGGGGCGAGAATCAGGTGCTCTT 43994 | || || |||||| |||||| ||||| ||||| || || ||||| || ||||| |||| Sbjct 4584 CGGCGGGCTTGAAGGAGTTGTCGGCGACTTCCTTGGTGGGCGCGAGGATGAGGTGTTCTT 4525 Query 43995 CTTCCTCGCGCCAACACAAAATGACCGCCGTCAGCATGATTCCGGCCGCGATCGTCGATT 44054 ||||||||||||| |||| || | |||||||||||||| ||||| ||||| || || | Sbjct 4524 CTTCCTCGCGCCAGCACAGGATCAGCGCCGTCAGCATGACGCCGGCGGCGATGGTGGACT 4465 Query 44055 TCGTATTCTTCTTGCTGATCAGCAGAAAGAACTCGCGGATCAGTTGCTTGCCGGTTTCGG 44114 | || |||||||||||||||||||| | | |||||||| || |||||||||| ||||| Sbjct 4464 TGGTGTTCTTCTTGCTGATCAGCAGCCCGTATTCGCGGATGAGCTGCTTGCCGGCTTCGG 4405 Query 44115 CATCGTAGGCACCGAAAATGGCCGCGACGAAATCGAAGACCCACTGCTCGCTGCATTCGC 44174 | || ||| | ||||| ||||| ||||| || ||||| ||||||||||| ||| |||| Sbjct 4404 CGTCATAGCCGCCGAAGATGGCGGCGACAAAGTCGAACACCCACTGCTCCGAGCAGTCGC 4345 Query 44175 CGAAGGTCGGCTTTCCCGGTAGGTCACAGACCCGCAGTTCCTTGAAGATCGCGACTGCCT 44234 ||||||| ||||| || || ||||| ||| ||||||||||||||||| |||| || | Sbjct 4344 CGAAGGTGGGCTTGCCGGGCAGGTCGACGACGCGCAGTTCCTTGAAGATGGCGAGCGCTT 4285 Query 44235 GCTCAGCCTGATCCGGGAAAATCGGCGGCGGAATGATCGACTCGCGCGCAATCAGCCGCC 44294 |||| ||||| |||||||| || |||| ||| ||||| |||||||| | ||||||| | Sbjct 4284 GCTCGGCCTGCTCCGGGAAGATGGGCGCCGGGATGATTGACTCGCGGTCGATCAGCCTGC 4225 Query 44295 TTTCCCAGTCGGGACATGCCGTTGTCCA------CTCCATCACTCGACCTTCTTGCCGCC 44348 | ||||||| | || || || | ||| | | ||| ||||| | | ||||| Sbjct 4224 GCTGCCAGTCGAGGCAGGCGGTGGACCAGGCGGCCGGCGTCATTCGACGCGCCTACCGCC 4165 Query 44349 GTTGGC 44354 |||||| Sbjct 4164 GTTGGC 4159 >seq47985 Length=581 Score = 190 bits (210), Expect = 6e-44 Identities = 226/302 (75%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 39263 CCGCCGCCGACGCGCTTCGTCGTGTAGAACAGTACGTACGGCTTCGCCGTGTACGGATCG 39322 ||||||||||||||||| || ||||||||||| |||| |||||| |||| ||||| ||| Sbjct 1 CCGCCGCCGACGCGCTTGGTGGTGTAGAACAGCACGTGCGGCTTGGCCGAATACGGGTCG 60 Query 39323 CGCAGCACGCGAACCCCGATGCGGTCGATGATCAGATACGTCTGCTGGAAGTCGCCGAAG 39382 |||||||| || || ||| |||||||| |||||| || || || |||||||||||| Sbjct 61 CGCAGCACCCGCACGCCGGCGCGGTCGACGATCAGGTAGCCCTTCTCGAAGTCGCCGAAC 120 Query 39383 AGAATCGGCGTCGAGTTCGCCGCCACATCCGGCATGTCCGGCACCTCGGTAACCGGATAG 39442 ||||| | ||| ||||| | ||||||||| || | |||||| ||||| || Sbjct 121 GCGATCGGACAGGTGTTGGCCGCGGCGTCCGGCATGGCCTCGATCTCGGTGACCGGGAAG 180 Query 39443 CCCGCCAGCGTCGCCGGCT-GCCCCGCTACGTACGACGGTTGCCAGAGATAGTTCCCTTG 39501 || ||| |||||| || |||| ||| | | || | ||||| ||||| ||||| Sbjct 181 CCGAGCAGGCTCGCCGACTGGCCCGGCTGC-AGGGCCGCGTTCCAGATGTAGTTGCCTTG 239 Query 39502 GCCGTCCTTCAGCTTCCGCACCTGACGCTG--CGTGTTGCGGTTCATCGCGAAGCGGGCG 39559 ||||||| | ||| |||| | ||||| |||| |||||||||| |||||||| || Sbjct 240 CGCGTCCTTGAACTT--GCACACGGCGCTGACCGTGCGGCGGTTCATCACGAAGCGGCCG 297 Query 39560 TT 39561 || Sbjct 298 TT 299 >seq108448 Length=47011 Score = 140 bits (154), Expect = 9e-29 Identities = 205/290 (71%), Gaps = 14/290 (5%) Strand=Plus/Plus Query 39258 GCAGGCCGCCGCCGACGCGCTTCGTCGTGTAGAACAGTACGTACGGCTTCGCCGTGTACG 39317 ||| |||||||||||||||||| ||||||||||| || ||| ||||||| || | || | Sbjct 25573 GCACGCCGCCGCCGACGCGCTTGGTCGTGTAGAAGAGAACGAACGGCTTGGCGCTATAGG 25632 Query 39318 GATCGCGCAGCACGCGAACCCCGATGCGGTCGATGATCAGATACGTCTGCTGGAAGTCGC 39377 ||||||| |||| ||| | |||||||| |||| || ||||| |||||||||||| Sbjct 25633 GATCGCGGAGCAGGCGCAGGCCGATGCGATCGACGACGAGATAGCCGCGCTGGAAGTCGC 25692 Query 39378 CGAA-------GAGAATCGGCGTCGAGTTCGCCGCCACATCCGGCATGTCCGGCACCTCG 39430 |||| ||||| | || || ||||| | | ||||||||| | ||||| Sbjct 25693 CGAATGCTATCGAGAAGCTGC--CG-----GCCGCGATCTGCGGCATGTCTTCCGCCTCG 25745 Query 39431 GTAACCGGATAGCCCGCCAGCGTCGCCGGCTGCCCCGCTACGTACGACGGTTGCCAGAGA 39490 || ||| || | |||||| ||| | || || | || ||| ||||||||| Sbjct 25746 ACAAGCGGGAAGTTCATCAGCGTTGCCTGAGCGCCTGCCAATGCCGGCGGCTGCCAGAGA 25805 Query 39491 TAGTTCCCTTGGCCGTCCTTCAGCTTCCGCACCTGACGCTGCGTGTTGCG 39540 |||| || ||| ||||||||| | || | ||| |||||| ||||| Sbjct 25806 TAGTGGCCGAGGCTATCCTTCAGCATGCGGATCTGGGCCTGCGTCTTGCG 25855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143228215356116