Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq107681 167 3e-36 seq109776 149 8e-31 seq18333 95.1 2e-14 >seq107681 Length=5071 Score = 167 bits (184), Expect = 3e-36 Identities = 574/880 (65%), Gaps = 15/880 (2%) Strand=Plus/Minus Query 32368 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 32427 |||||||||| || || || | |||||| || ||||| ||||| |||| || ||||| Sbjct 4510 TTTTTTGGTAATCTCCTACCCTTTTTTCAAAGAAATTGGTTTTGCCTTGTAGGGATATCA 4451 Query 32428 TTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 32487 | ||||| ||||| || || || | | || | ||| | | |||| ||| | Sbjct 4450 TCTCCATAAAATCAAACGGGTTAGATGCGCCGTACACTTTAGGATAACCCAGTTCGCCTA 4391 Query 32488 TCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 32547 | | | || || ||||| || || ||| |||||| || | ||||| ||||| | Sbjct 4390 ACCAACGGTCAGCCACAAACTCAATGTATTGGCTCATCAATTTAGCGTTCATCCCTATTA 4331 Query 32548 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 32607 || || | || | |||| |||||||| |||||| |||||||| || |||| Sbjct 4330 ACGATACCGGCAATGCGTCGGTAATAAATTCTTTTTCAATCTCTACCGCGTCGGTAATAA 4271 Query 32608 TAGATCTTACTGTTTCTTCACTCGGTGGATACAATAA-ATGTTTAAACATCAAACATGCG 32666 | | |||| |||| ||| || || | | || || | || || || Sbjct 4270 TTTTGGTAACTGCTTCTGTGCTCAGTTTATTCTCCAGCATACCGTAA-AGCAGGCAGGCA 4212 Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 || ||||||||| ||| || || | || | |||||| ||| || | ||||||| Sbjct 4211 AATTCGCAGTGTGAACCTTCATCGCGCGATATCAGTTCGTTACTAAAGGTCAATCCGGGC 4152 Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAAGAAAATTCC 32785 || |||||||| ||||| | ||| || || || || | | ||| ||||||||||| || Sbjct 4151 ATCAGGCCACGTTTTTTTAACCAGAAGATAGAA-CAGAAGCTCCCTGAAAAGAAAATGCC 4093 Query 32786 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTT 32845 ||| || |||||||| || | | | ||| || | || || || | ||||| Sbjct 4092 TTCAACAGCCGCAAATGCTACCAAACGCTCGGCAAA---GGTGCCGTTGTTGATCCAGCG 4036 Query 32846 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 | ||||| || |||||||||| ||||| || || || || | || | || | | Sbjct 4035 CAGCGCCCACTCTGCCTTCTTTTGCACACATGGAATCGTATCAACCGCGTGGAACAAACG 3976 Query 32906 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 32965 | ||||||| ||||||| || ||||| |||| || || | || || || Sbjct 3975 ATCTTTTTCAACCGGGTCTTTAATGTAAGTATCTATCAGTAGCGCGTAGGTCTCTGAGTG 3916 Query 32966 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTC-GGTAATCTGTACTT 33024 ||||| || || || ||||| ||||| ||||| | || || |||||| || || | Sbjct 3915 GATGTTCTCCATCATGATCTGAAAACCGTAAAAGCAACGGGCTTCGGGTAAT-TGCACCT 3857 Query 33025 CTGTACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 33082 | | || | ||| | || | ||||| ||||| || || || ||||| |||||||| Sbjct 3856 C-GCTCATGA-AGTTCACAGCAAGGTTTTCGTTCACAATACCATCGCTGGCGGCAAAAAA 3799 Query 33083 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT-CCAATCATTGA 33141 |||| | || || |||| ||| ||| | || ||| | || ||||| || | Sbjct 3798 AGCCAGGATGTGCGAAATGAAATGTTTCTCGCCCGG-GTTCATGGCTTCCCAATGTTTCA 3740 Query 33142 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33201 || | || | || | |||||| |||||||||| || || | |||||||||| Sbjct 3739 GGTCGTCCGACAGGTCAATTTCTTCGGCTGTCCAAAAGCTGGCTTCCGATTTTTTATACA 3680 Query 33202 TATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 | | ||| || || | |||| || |||| || ||||| Sbjct 3679 TCTCCCAAATAGCAGGGTATTTTATAGGAAGTATTACAAA 3640 >seq109776 Length=48066 Score = 149 bits (164), Expect = 8e-31 Identities = 376/569 (66%), Gaps = 12/569 (2%) Strand=Plus/Plus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| || || ||||| ||| ||| | || ||||||| || || | || |||||| Sbjct 3897 AACAACAGGCAGGCGAAGTCGGTGTGCATGCCTTCGTCTCGGCTGATGAGCTCATTGGAA 3956 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || | |||||||| || || ||||| || |||||||| |||| ||| || || || Sbjct 3957 AATGTCAAGCCGGGCATGAGACCGCGCTTCTTCAGCCAAAAAATGGCCGCGAAAGAACCG 4016 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 || ||||| || || || || || ||||| || || || | ||| || | || | Sbjct 4017 GAGAAGAAGATCCCCTCAACCGCAGCAAAAGCGATGAGGCGCTCAGCAAA--CGAAGTCT 4074 Query 32832 TCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 32886 || ||| ||||| ||||||| || || || || ||||| || || |||| Sbjct 4075 TCTTGTCCGAAATCCAGCGAAGAGCCCATTCTGCTTTGCGCTTGACACAGGGAATGGTCT 4134 Query 32887 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 32946 | | ||| | || || || | |||| | ||||||| || |||||||| | || Sbjct 4135 CGACAGCGTCGAAAAGGTATTCACGTTCAGCAGGGTCTTTAATGTAAGTATCAATGAGAA 4194 Query 32947 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAG 33006 | || | || || |||||||| || || |||||||| ||||||||||| | || Sbjct 4195 GCGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATTTGAAAACCGTAGAAGCAGCGAG 4254 Query 33007 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 33066 |||| | || || || | | || || || | | || || || || || || | Sbjct 4255 CCTCTGCGGCTTGGACCTCATTCGAGAAGCGCTCGACGAGGTTCTCGTTGACGATACCAT 4314 Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT---- 33122 || ||||||||| || || | ||||| || |||| |||| || ||| Sbjct 4315 CAGAGGCTGCAAAGAAAGCGAGGACATGAGAGATGAAATGACGCTCGT-TGTCGTTGAGG 4373 Query 33123 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 33182 | || ||||| |||| | ||| || || | |||| || || | ||||||||||| Sbjct 4374 CGGTTCTTCCAGTCATGTAAATCCTTTGAGAGGTCCATCTCCTCTGCAGTCCAAAATGAG 4433 Query 33183 GCCTCTGCCTTTTTATACATATTCCAGAT 33211 || || ||||| || ||||| | ||| || Sbjct 4434 GCTTCGGCCTTCTTGTACATTTGCCATAT 4462 >seq18333 Length=334 Score = 95.1 bits (104), Expect = 2e-14 Identities = 172/252 (68%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 || ||| || || || || ||| ||| ||| ||| | |||| ||||||||||| || Sbjct 292 TAAACCAATACCGCCGGCGCTTTGAGAAATTTTAGCGGTTTGTTTCAACGTATCATATAT 233 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63465 || || ||||| |||||| ||||| | | || |||||| |||||||| | | Sbjct 232 ACCATCAATACTGTCATCCTTCATGGTTAATAAAAAACATGATGACATTTGTGGCTTAGG 173 Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 || || |||||||| |||||||| | ||||| |||||||| || | || | Sbjct 172 GGTGCCTGCATTAAACAAGGTAGGGGTTGCGTGCGTAAACCAACGCTCGCTCATCAGGTG 113 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| || | || || || |||||| || ||| || || || | |||||||| || Sbjct 112 GTAGGTTTTGATGGCGCTTTCAATATCCGCTTTATGGATCCCAACCGATACACGCATAAA 53 Query 63586 CATGTGCTGAGG 63597 || ||||| || Sbjct 52 CAAATGCTGCGG 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632751243599600