Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq109776 145 1e-29 seq101313 89.7 1e-12 >seq109776 Length=48066 Score = 145 bits (160), Expect = 1e-29 Identities = 355/528 (67%), Gaps = 15/528 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || ||||| || |||||||| || || ||||| |||||||| | | | ||| | Sbjct 4336 CTCGCTTTCTTTGCAGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAGCGCTTCTCG 4277 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || ||||| || | ||||| |||||||||||||| || || || || |||||| Sbjct 4276 AATGAGGTCCAAGCCGCAGAGGCTCGCTGCTTCTACGGTTTTCAAATCATGATGGAGAAC 4217 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAG 42599 | ||||| ||| ||| | || |||| | || ||||| || || | || Sbjct 4216 ATTCACTCCGAGACCTACTCG---CTTCTCATTGATACTTACATTAAAGACCCTGCTGAA 4160 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 ||| | || ||| | || | ||||| || ||||| ||||| || || || ||| Sbjct 4159 CGTGAATACCTTTTCGACGCTGTCGAGACCATTCCCTGTGTCAAGCGCAAAGCAGAATGG 4100 Query 42660 GCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 || || |||||| | | | || | | |||| | ||| | || | || ||| | Sbjct 4099 GCTCTTCGCTGGATTTCG-GACAAGAAGACTTCGTTTGCTGAGCGCCTCATCGCTTTTGC 4041 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-A 42777 || || ||||| ||||||||||| || | ||||| |||| || ||||| ||| || Sbjct 4040 TGCGGTTGAGGGGATCTTCTTCTCCGGTTCTTTCGCGGCCATTTTTTGGCTGAAGAAGCG 3981 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 ||| || |||||||| | || || || || || ||||||||| | ||||| || ||| Sbjct 3980 CGGTCTC-ATGCCCGGCTTGACATTTTCCAATGAGCTCATCAGCCGAGACGAAGGCATGC 3922 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTC-GAAGGAG 42896 | | ||||| |||||||| ||||| ||||| || | | | | |||| || || Sbjct 3921 ACACCGACTTCGCCTGCCTGTTGTTC---AGCCATCTTAAACGC-CGACCTCACAACGAC 3866 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 ||| | ||||||| ||||| || ||||||||| | |||||| Sbjct 3865 GTCGTCAAGAATATCATCAAAGAGGCTGTTGAGATCGAGCAAGAGTTC 3818 >seq101313 Length=130 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 42418 ACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGT 42477 |||| ||||| || || |||||| || || || || ||||||||||||||| | | Sbjct 128 ACATCCTGGCATTTTTTGCCGCCAGCGATGGTATCGTGAATGAGAACCTGGCCGTGAATT 69 Query 42478 TCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGAT 42529 |||||| ||||| |||| ||||||||||||||| ||||| |||||||| Sbjct 68 TCATGAGTGAGGTACAGTTACCTGAGGCGCGCTGCTTTTACGGTTTCCAGAT 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943026556707760