Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq18243 140 7e-29 seq31939 102 2e-17 seq109009 82.4 2e-11 >seq18243 Length=2233 Score = 140 bits (154), Expect = 7e-29 Identities = 197/269 (73%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 5228 GCGGGAAGAAGGACGGCATCCAGCTCATTCCCGTGTCCGAGGTCGCCGCGAAGGACGAGT 5287 ||||| | || | ||||||||| ||||||| | |||| ||||||| |||||||||| Sbjct 309 GCGGGCATGAGAAGGGCATCCAGATCATTCCGATCAGCGAGATCGCCGCCAAGGACGAGT 368 Query 5288 TCTTCAACATCAAGAACGTGACGCGCGACGATCTGCTCGCCGCGCACCGCGTGCCGCCGC 5347 | || ||||||||| |||||||||| | || |||||||| || |||||||| | Sbjct 369 TTGTCGGGATCAAGAACACCTCGCGCGACGACGTCCTGGCCGCGCATCGGGTGCCGCCCC 428 Query 5348 AGTTGCTCGGCATCGTGCCGAGCAATTCGGGCGGGTTCGG-CACGCCGGATACCGCCGCG 5406 || |||| ||||||||||| ||| | ||||| ||||| | | | |||| ||| || Sbjct 429 AGCTGCTGGGCATCGTGCCCGCCAACGCCGGCGGCTTCGGTGATGTC-GATAAGGCCTCG 487 Query 5407 CGTGTGTTCGGGCGCAACGAAATCAGGCCGCTACAGGCG-CGCTTCGCCGAGCTGAA-CG 5464 ||||||| ||||||||| |||| |||| | | ||| | || || ||| || || Sbjct 488 GCCGTGTTCGAGCGCAACGAGATCAAGCCG-TTGATGCGTTGGTTTACCTCGCTCAATCG 546 Query 5465 ACTGGCTCGGCGACGAGGTCGTGACGTTC 5493 | |||||||| ||||| |||| |||| Sbjct 547 GC-AGCTCGGCGTCGAGGCGGTGAAGTTC 574 Score = 98.7 bits (108), Expect = 2e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 4984 CGGCCGGACATCAATCAGGAGGTCTATGGCCTGCCCGAGTATCTGAGCTCGCTGCACTCG 5043 || ||||||||||| ||| | ||||| ||||| ||||| || || || | ||||| || Sbjct 65 CGTCCGGACATCAACCAGAACGTCTACGGCCTACCCGAATACCTTGGCGCCCTGCAGTCA 124 Query 5044 GCCTGGCTGAACGAATCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCAGCCAC 5103 || | || ||||| | |||| |||||||| |||||||| ||| |||||| ||| Sbjct 125 GCGTTCCTCAACGAGGCCGCGACCCTGTTCCGCCGCAAGTACTACCTCAACGGCTCGCAC 184 Query 5104 GCCGGCTTCATCCTGTACATGACCGAC 5130 | |||||| |||||| || |||||| Sbjct 185 GTCGGCTTTATCCTGCGCAGCACCGAC 211 >seq31939 Length=505 Score = 102 bits (112), Expect = 2e-17 Identities = 270/400 (68%), Gaps = 33/400 (8%) Strand=Plus/Minus Query 2933 GAGAAGAAGGACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCGCCAAGTCGAGCGG 2992 ||||||||||| ||| |||| |||||||||||| |||||| ||||| ||||| | Sbjct 505 GAGAAGAAGGAGGGCATCGACTTCAAGGAAATCGATCTGCTCAAGCGCCAGCTCGAGGGC 446 Query 2993 CTCGCGCGCGTGCGCAAGTACGACGAGACGGGGAAGGAATCGGACCTGAACCCGAAGATT 3052 ||||||| | ||||||||| || |||| || ||||||| | |||||| || Sbjct 445 GTCGCGCGGATCCGCAAGTACATTGATGGCGGGACCGAGACGGACCTCAGCCCGAACATC 386 Query 3053 GCGTCGCGCAACGCCG-GCCC--GAA-ACGCCGTGCGCCCCGTAACGA--AATCAG---- 3102 || | |||||||| | |||| ||| |||| |||| | | ||| | |||| Sbjct 385 GCCGCCCGCAACGCAGCGCCCAAGAAGGAGCCG-GCGCGCGGCAACCATTTCTCAGCCGA 327 Query 3103 ------CGACGAACAGCACAAGCGCATCATCGAAGCGTTCCGCGATTCGCTGTTCGACTA 3156 || ||||| | |||| || | |||| |||| | | ||| | | || | Sbjct 326 CCAGGTCGTCGAACTTCGCAAG-GC--CCTCGAGGCGT-----GGT--GCT-TCCCAC-A 279 Query 3157 TCAGAAAGTCTGG--TATCGGAACGGCGATCAGCGCACGCGCAACATCCTGAAATCGCGG 3214 ||| | |||| | | | || || | ||||||||| | |||||||| | || Sbjct 278 CCAGCTCGACTGGCTGAACAGCTCGTCG--CTGCGCACGCGGATGATCCTGAAGGCCCGC 221 Query 3215 CAGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCGCTCGACACCGAC 3274 ||||| || || ||| || ||| || || |||||| | ||| ||||||||| |||| Sbjct 220 CAGATTGGGGCAACGGAGTTCTTTGCCCGTGAGGCGTTGGTCACCGCGCTCGAGACCGGT 161 Query 3275 CGCAATCAGATCTTCCTATCGGCCAGCAAGGCGCAGGCGC 3314 | ||| |||| ||||| |||||| ||||| ||||||| Sbjct 160 CACAACAAGATTTTCCTGTCGGCCTCGAAGGCCCAGGCGC 121 >seq109009 Length=20967 Score = 82.4 bits (90), Expect = 2e-11 Identities = 45/45 (100%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 7983 TTGAAAATCCGCGTGTCGGTGGTTCGATTCCGCCCCAGGCCACCA 8027 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15722 TTGAAAATCCGCGTGTCGGTGGTTCGATTCCGCCCCAGGCCACCA 15766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114098732046486