Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq18243 129 1e-25 seq31939 87.8 4e-13 >seq18243 Length=2233 Score = 129 bits (142), Expect = 1e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 5283 GCGGGAAGAAGGACGGCATCCAGCTCATTCCCGTGTCCGAGGTCGCCGCGAAGGACGAGT 5342 ||||| | || | ||||||||| ||||||| | |||| ||||||| |||||||||| Sbjct 309 GCGGGCATGAGAAGGGCATCCAGATCATTCCGATCAGCGAGATCGCCGCCAAGGACGAGT 368 Query 5343 TCTTCAACATCAAGAACGTGACGCGCGATGACCTGCTCGCCGCACACCGCGTGCCGCCGC 5402 | || ||||||||| ||||||| ||| | || ||||| || || |||||||| | Sbjct 369 TTGTCGGGATCAAGAACACCTCGCGCGACGACGTCCTGGCCGCGCATCGGGTGCCGCCCC 428 Query 5403 AGTTGCTCGGCATCGTGCCGAGCAATTCGGGCGGGTTCGG-CACGCCGGATACCGCTGCA 5461 || |||| ||||||||||| ||| | ||||| ||||| | | | |||| || | Sbjct 429 AGCTGCTGGGCATCGTGCCCGCCAACGCCGGCGGCTTCGGTGATGTC-GATAAGGCCTCG 487 Query 5462 CGCGTGTTCGGGCGCAACGAAATCAGGCCG 5491 |||||||| ||||||||| |||| |||| Sbjct 488 GCCGTGTTCGAGCGCAACGAGATCAAGCCG 517 Score = 98.7 bits (108), Expect = 2e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 5039 CGGCCGGACATCAATCAGGAGGTCTATGGCCTGCCCGAGTATCTGAGCTCGCTGCACTCG 5098 || ||||||||||| ||| | ||||| ||||| ||||| || || || | ||||| || Sbjct 65 CGTCCGGACATCAACCAGAACGTCTACGGCCTACCCGAATACCTTGGCGCCCTGCAGTCA 124 Query 5099 GCCTGGCTGAACGAATCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCAGCCAC 5158 || | || ||||| | |||| |||||||| |||||||| ||| |||||| ||| Sbjct 125 GCGTTCCTCAACGAGGCCGCGACCCTGTTCCGCCGCAAGTACTACCTCAACGGCTCGCAC 184 Query 5159 GCCGGCTTCATCCTGTACATGACCGAC 5185 | |||||| |||||| || |||||| Sbjct 185 GTCGGCTTTATCCTGCGCAGCACCGAC 211 >seq31939 Length=505 Score = 87.8 bits (96), Expect = 4e-13 Identities = 260/391 (66%), Gaps = 15/391 (4%) Strand=Plus/Minus Query 2988 GAGAAGAAGGACGGCGCGGACTACAAGGAAATCGACCTGCTCGGCCGCCAAGTCGAGCGG 3047 ||||||||||| ||| |||| |||||||||||| |||||| ||||| ||||| | Sbjct 505 GAGAAGAAGGAGGGCATCGACTTCAAGGAAATCGATCTGCTCAAGCGCCAGCTCGAGGGC 446 Query 3048 CTCGCGCGCGTGCGCAAGTACGACGAGACGGGGAAGGAATCGGACCTGAACCCGAAGATT 3107 ||||||| | ||||||||| || |||| || ||||||| | |||||| || Sbjct 445 GTCGCGCGGATCCGCAAGTACATTGATGGCGGGACCGAGACGGACCTCAGCCCGAACATC 386 Query 3108 GCGTCGCGCAACGCCG-GCCC--GAA-ACGCCGTGCGCCGCGCAACGAAATCAGCGACGA 3163 || | |||||||| | |||| ||| |||| |||| ||||| | || | ||| Sbjct 385 GCCGCCCGCAACGCAGCGCCCAAGAAGGAGCCG-GCGCGCGGCAACCATTTCTCAGCCGA 327 Query 3164 GCAGCACAAGCGCATCATCGAAGCGTTCCGCGATTCGCTG---TTCGACTATCAGAAAGT 3220 ||| | | | | ||| | | || ||| || | ||| | ||| | Sbjct 326 CCAGGTC--GTCGAACTTCGCA-AGGCCCTCGAGGCGTGGTGCTTCCCACACCAGCTCGA 270 Query 3221 CTGG--TATCGGAACGGCGATCAGCGCACGCGCAACATCCTGAAATCGCGGCAGATCGGT 3278 |||| | | | || || | ||||||||| | |||||||| | || ||||| || Sbjct 269 CTGGCTGAACAGCTCGTCG--CTGCGCACGCGGATGATCCTGAAGGCCCGCCAGATTGGG 212 Query 3279 GCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCCCTCGACACCGACCGTAATCAA 3338 || ||| || ||| || || |||||| | ||| ||| ||||| |||| | || | Sbjct 211 GCAACGGAGTTCTTTGCCCGTGAGGCGTTGGTCACCGCGCTCGAGACCGGTCACAACAAG 152 Query 3339 ATCTTCCTGTCGGCGAGCAAGGCTCAGGCGC 3369 || ||||||||||| ||||| ||||||| Sbjct 151 ATTTTCCTGTCGGCCTCGAAGGCCCAGGCGC 121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117131521916024