Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_009237.1 Length=37446 Score E Sequences producing significant alignments: (Bits) Value seq109454 87.8 4e-13 seq86992 84.2 5e-12 >seq109454 Length=55839 Score = 87.8 bits (96), Expect = 4e-13 Identities = 180/268 (67%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 25573 TTCACGGCGTCCTTCAACCCCTTGCCGGCCTTGAACTTCGGCGCTTTCGACGCTGGAATC 25632 |||||||||||||| | ||||||||| |||||||| ||| | || | || | ||| Sbjct 54936 TTCACGGCGTCCTTGAGGGCCTTGCCGGGTTTGAACTTGGGCACCTTGGCCGATTTGATC 54995 Query 25633 TTGATTTCTTCGCCGGTTGCGGGATTGCGTCCGGTGCGGGCGGCCCGCGCGCCCACGCTG 25692 ||||| | ||| || ||| ||||| ||||||||||| || ||| | |||||| Sbjct 54996 TTGATCGCCTCGTTCGTGCGGGGGTTGCGGCCGGTGCGGGCAGCACGCTTGGTGACGCTG 55055 Query 25693 AATACGCCGAATCCCGTCAGCGTCACCGTGTCGCCCTTGCGCAGCGACTTCGTGATGCCT 25752 || ||||| || ||||| || ||| || ||| ||||| | || ||| ||| Sbjct 55056 AAGGTCCCGAAGCCTACCAGCGAGACGGTGCCGTTCTTCTTCAGCGTCGTCTTGACGCCG 55115 Query 25753 TCGAGAACGGCTTCCAGCGCAAAGCCGGAGTCGGCTTTCGTCAGGCCCGTTTCCGCTGCC 25812 | | ||||| || ||||| || | | | || || | | | | | | | || Sbjct 55116 CCAATCACGGCCTCGAGCGCGCGTCCCGCGGCAGCCTTGGAAATGTCGGCCTGCTTGGCG 55175 Query 25813 ACGTGATTGATCAGGTCCGATTTGTTCA 25840 | ||| | |||||| || |||||||||| Sbjct 55176 ATGTGCTCGATCAGTTCGGATTTGTTCA 55203 >seq86992 Length=9025 Score = 84.2 bits (92), Expect = 5e-12 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 25573 TTCACGGCGTCCTTCAACCCCTTGCCGGCCTTGAACTTCGGCGCTTTCGACGCTGGAATC 25632 || |||||| |||| | | ||| ||| ||| || |||| ||||||||| | ||| Sbjct 8675 TTGACGGCGGCCTTGAGGGTCGCGCCAGCCGAGAATTTTGGCGATTTCGACGCGGCGATC 8616 Query 25633 TTGATTTCTTCGCCGGTTGCGGGATTGCGTCCGGTGCGGGCGGCCCGCGCGCCCACGCTG 25692 ||||| |||||||||| | |||||||| || |||| ||||| ||| | | ||| | Sbjct 8615 TTGATCGCTTCGCCGGTCGATGGATTGCGGCCCTTGCGTGCGGCGCGCTTGGCGACGGAG 8556 Query 25693 AATACGCCGAATCCCGTCAGCGTCACCGTGTCGCCCTTGCGCAGCGACTTCGTGATGCCT 25752 || |||||| || || | |||||||||||| || ||| || |||||| | Sbjct 8555 AAGGTGCCGAAACCGGTGATACCCACCGTGTCGCCTTTTTTCAGGCGCTCGGTGATGATT 8496 Query 25753 TCGA 25756 |||| Sbjct 8495 TCGA 8492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119547527333696