Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_009447.1 Length=52414 Score E Sequences producing significant alignments: (Bits) Value seq107209 190 7e-44 seq52315 93.3 1e-14 >seq107209 Length=46261 Score = 190 bits (210), Expect = 7e-44 Identities = 301/427 (70%), Gaps = 7/427 (2%) Strand=Plus/Plus Query 29319 CCCGGCGTATTCACGCCGCGTGACTCCATGCACATGTGGCGAGCA-TTGATCGTGACGTA 29377 |||||||| | |||||| ||||||||||| ||||| ||| ||||| ||| Sbjct 39398 CCCGGCGTGCGGATGCCGCGGCTTTCCATGCACATATGGCG-GCACTTGATGACCACGCC 39456 Query 29378 AACCGCGCGCGGCTGAACGTGTTGGGCCAGCGCATCCGCGATCTGGTTCGTCAGGCGCTC 29437 ||| || ||||| || || |||||| | ||||||||| |||||| ||| || Sbjct 39457 AACGGCCTTCGGCTCAAGCACTTCCATCAGCGCGTTGGCGATCTGGATCGTCATGCGTTC 39516 Query 29438 TTGAACTTGCAGGCGCTTGGCGAAAATGTCTGCCAGCCGCTTGAGCTTCGAAATACCGAC 29497 || || ||||||||||||||||| ||| |||| || ||||||| || | ||||| Sbjct 39517 CTGTACCTGCAGGCGCTTGGCGAAGCAGTCGACCAGGCGGGTGAGCTTGGACAGGCCGAC 39576 Query 29498 GACTTTGCCGCTCGGGATATAGCCGATATGGGCCGTTCCCATGATCGCCGCCATATGGTG 29557 || ||| ||| |||| | ||||||||| |||| | || | || || ||||| ||||| Sbjct 39577 GATTTTCCCGTTCGGCAGATAGCCGATGGTGGCCTTGCCGAAGAACGGCGCCAGGTGGTG 39636 Query 29558 TTCGCAGTGCGAATAGATCGGGATATCGCGAACGATAATCCAGTCGTCGGAGCCTTCCGC 29617 ||||| || |||| || || |||| |||| ||| | |||| | | | || || Sbjct 39637 CTCGCAATGGCTGTAGACGGGAATGCCGCGCACGACGATCAACTCGTTGTACTCCTCGGC 39696 Query 29618 GCCATCCTCGAACACCTTGAGCACTTCGGCCGGGTCGTGCATATAGCCCGCCGCCCA-TG 29676 ||| || ||||| ||||||||| ||| |||| || || ||||||| | ||| || Sbjct 39697 GCCGTCTTCGAAAGCCTTGAGCAGCTCGACCGGATCCTGGCCGTAGCCCGAGGTCCAGTG 39756 Query 29677 ACGACAACCACGCCTTGACGACTCGCTTCGGCGTTTCGCGCAAGCCTTCGCGGTCGATGT 29736 | |||||||||| | || ||| |||||||||| ||| ||| ||||||| || Sbjct 39757 ----CTTCCACGCCTTGGCCACGCGCGCCGGCGTTTCGTGCAGGCCCGTGCGGTCGGGGT 39812 Query 29737 CTTCGCC 29743 |||||| Sbjct 39813 TTTCGCC 39819 >seq52315 Length=416 Score = 93.3 bits (102), Expect = 1e-14 Identities = 219/327 (67%), Gaps = 9/327 (3%) Strand=Plus/Plus Query 29409 GCATCCGCGATCTGGTTCGTCAGGCGCTCTTGAACTTGCAGGCGCTTGGCGAAAATGTCT 29468 || || |||||||| | |||| | ||| || || || ||||||||||| || || Sbjct 31 GCGTCGGCGATCTGCATGGTCATGGTCTCCTGGGTCTGGAGACGCTTGGCGAAGATCTCG 90 Query 29469 GCCAGCCGCTTGAGCTTCGAAATACCGACGACTTTGCCGCTCGGGATATAGCCGATATGG 29528 | ||| || ||||| || | |||||||| |||||| |||| || ||| |||| | Sbjct 91 GTCAGGCGGGCCAGCTTGGACAGGCCGACGACCTTGCCGGTCGGCATGTAGGCGATCCAG 150 Query 29529 GCCGTTCCCATGATCGCCGCCATATGGTGTTCGCAGTGCGAATAGATCGGGATATCGCGA 29588 ||| | |||| || || ||||| |||||||||||||| | | ||| |||| Sbjct 151 GCCTTGCCCAGGAACGGGGCCATGTGGTGTTCGCAGTGGCTCTGCACGTCGATGCCGCGC 210 Query 29589 ACGATAATCCAGTCGTCGGAGCCTTCCGCGCCATCCTCGAA---CACCTTGAGCACTTCG 29645 | || | | |||||| |||| | | || |||||||| | ||| | | | Sbjct 211 AGCATGACCATGTCGTCATAGCCCTGCACG---TCCTCGAAGGTGCGCGACAGCTCCTTG 267 Query 29646 GCCGGGTCGTGCATATAGCCCGCCGCCCATGACGACAACCACGCCTTGACGACTCGCTTC 29705 ||||| ||| ||||||| || ||| || || | || | ||| || |||| Sbjct 268 GCCGGATCGCCGGTATAGCCGGCGAACCA-CTCGCCA--TAGGCGTCGACCACGCGCTGG 324 Query 29706 GGCGTTTCGCGCAAGCCTTCGCGGTCG 29732 ||||| ||| ||| ||||||||||||| Sbjct 325 GGCGTGTCGAGCAGGCCTTCGCGGTCG 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167381877984112