Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq106661 217 4e-52 seq107979 127 6e-25 >seq106661 Length=1067 Score = 217 bits (240), Expect = 4e-52 Identities = 338/482 (70%), Gaps = 16/482 (3%) Strand=Plus/Minus Query 42649 CACGCCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGT 42708 || |||||| || |||||||||||| ||| | | ||| | | ||| ||| Sbjct 972 CAGGCCCACGCACATGGCGTTGACCAGGATGTTGCCGTTGTAGCCCTTGTGGAAGTTGGT 913 Query 42709 CTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGAC 42768 ||||||| ||| | |||| || | ||||||||||||| | ||||||| ||| Sbjct 912 CTCGCCGGCGACCGTGGGCACGCCCACGCAGTTGCCGTAGCCGGCGATGCCGGAAACGAC 853 Query 42769 GCCGTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCAT 42828 ||||| || | ||| || | || | | || ||||||| |||||||||| || Sbjct 852 GCCGTCGACCAGGCGCTTGGTCTTCGGATGGCTGGGATCGCCGAACCGCAGGGCGTTCAG 793 Query 42829 GACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGT 42888 | |||| ||| || |||||||| | || || |||||| | |||||||||||| ||||| Sbjct 792 CAGGGCGATCGGCCGCGCGCCCATCGTGAAGACGTCGCGCATGATGCCGCCCACGCCCGT 733 Query 42889 CGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGT 42948 |||||||||||| ||||||||||| | || ||||||||||| |||||| |||||| | Sbjct 732 CGCCGCGCCCTGATAGGGCTCGATGTAGGACGGGTGGTTGTGGCTCTCCATCTTGAAGAT 673 Query 42949 GACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCTGCCCCATCCCGACCATGAG 43008 || ||| || ||| ||| |||||||||||| ||||||| || ||| |||| Sbjct 672 GATGGCCTGGCCGTCGTCGATGTCGATGACGCCGGCGTTCTCACCAGGGCCGCAAATGAC 613 Query 43009 GCGCTCGCGCATCTCGTCCGAGACCTTCTGCCCGAACCTCTTGAGGTAGAGCTTGCTCGA 43068 |||| || | | || || | |||| |||| || | | ||| || Sbjct 612 GCGCGGGC---------CGGTGA---TCGG---GAACTTCTTCAGCTGGTTCTTCGAGGA 568 Query 43069 CTTGTAGGAGCAGTGCTCCGACCACATCACCGAGTACATCGCCAGCTCGCCCGAGGTGGG 43128 |||||| ||||||||||| ||||||||||||||| | | ||||||| | | |||| || Sbjct 567 CTTGTACGAGCAGTGCTCGGACCACATCACCGAGAAGACGCCCAGCTC-CACCAGGTTGG 509 Query 43129 GC 43130 || Sbjct 508 GC 507 >seq107979 Length=64576 Score = 127 bits (140), Expect = 6e-25 Identities = 206/289 (71%), Gaps = 7/289 (2%) Strand=Plus/Minus Query 42709 CTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGAC 42768 ||||||||||| |||||| |||| | | ||||||||| | || ||| | ||| Sbjct 25420 CTCGCCGCCGACCGTCGGCACGCCGAAGGAATTGCCGTAGCCACCGACACCGGCGACGAC 25361 Query 42769 GCCGTGC-ACGACCCGCGCCGTGT-CGGGGTCG-TCGGCCGCGCCGAAGCGCAGGGCGTC 42825 || ||| |||| || ||||| || || | || | |||||||||||| || |||| Sbjct 25360 ACC-TGCGACGATATGC--CGTGTGCGCGGATGATCCGGCGCGCCGAAGCGGAGTGCGTT 25304 Query 42826 CATGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACC 42885 |||| | || | ||| ||||| ||||| | || || |||||| | ||| || || || || Sbjct 25303 CATGGCGGCAATCGGCCGAGCACCCATCGTGAAGACGTCGCGCAGGATACCACCGACGCC 25244 Query 42886 CGTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAA 42945 ||||||||| ||||| | |||||||| | || || || || || |||||| |||||| Sbjct 25243 CGTCGCCGCCCCCTGATACGGCTCGATATAGGACGGATGATTATGGCTCTCCATCTTGAA 25184 Query 42946 CGTGACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCT-GCCC 42993 ||| | || ||||||| |||| ||||| || |||| |||| Sbjct 25183 GACAACCACGTCGCCATCGCCGATATCGACCACGCCAGCATTCTCGCCC 25135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148050638868374