Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq11946 116 8e-21 seq109776 109 1e-18 seq83150 100 6e-16 seq38326 95.1 3e-14 >seq11946 Length=4023 Score = 116 bits (128), Expect = 8e-21 Identities = 273/410 (67%), Gaps = 4/410 (1%) Strand=Plus/Plus Query 68399 AATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGA 68458 ||| | ||| || || | || || ||||||||| || |||| | |||||| | || Sbjct 2401 AATATACCAGGCATCCACATCCGAATTGTATGGATTGGTTCAAGCTGTCCCTCAGTCAGA 2460 Query 68459 AAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGAT 68518 || ||||||||||||||| || || |||| |||||||| | || || |||||||| Sbjct 2461 AACTACTCCGTTTTATCCGCGGTCGCCCTACGCAGTTGCAAAACTCTATGCCTATTGGAT 2520 Query 68519 --CTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAAT 68576 | || |||||| || || | ||| ||||| || |||||| ||| || ||| Sbjct 2521 AACCGT--AAATTATCGCGAAGCCTATGGCATGTTTGCTTGCAACGGGATACTATTTAAT 2578 Query 68577 CACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCG 68636 || || ||||| | ||| | || || || |||||||| ||| | | || Sbjct 2579 CATGAAAGTCCATTGCGGGGCGAAACTTTTGTTACACGTAAAATAACGCGCGCTGCGGCC 2638 Query 68637 AATATTTTCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGAT 68696 || ||| | ||| | |||| ||||| | |||||| | ||||| || | ||| Sbjct 2639 AAAATTGCCTTGGGTTTACAAAATAAATTGTATTTGGGTAATCTTGATGCACAACGGGAT 2698 Query 68697 TGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCG 68756 ||||| |||| || || || || || ||||||| | || || || |||||| || Sbjct 2699 TGGGGGCATGCAAAAGACTATGTCGAGGCAATGTATCTTATTCTTCAGCAAGATGAACCA 2758 Query 68757 GATGACTATGTGATTGCAACAGGGAAAACAACGAGCGTTCGTGAGTTCGT 68806 || || | ||| || || || || |||||| || || | ||||| || Sbjct 2759 GAAGATTTTGTAATAGCCACCGGCGTAACAACAAGAGTGAGAGAGTTTGT 2808 >seq109776 Length=48066 Score = 109 bits (120), Expect = 1e-18 Identities = 126/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || || ||||||||| | |||| ||| | |||||||| |||||||| || ||||| | Sbjct 3742 CTCATCGGCATGAACGCCAAACTAATGTGCCAGTACATTGAATTCGTCGCTGACCGGTTG 3683 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | || || || || ||||||| | ||||| || | |||||| || | ||| ||||| Sbjct 3682 CTAATTGCTCTCGGCAATGAGAAGATTTACAAGTCTACGAACCCATTCGACTTCATGGAT 3623 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTC--GAAAAGCGTGTCAG 243728 | || || || || || || |||||||||||| |||| ||||||||| Sbjct 3622 ATGATCTCACTCCAGGGCAAGACTAACTTCTTCGAGAAACGCGTGTCAG 3574 >seq83150 Length=232 Score = 100 bits (110), Expect = 6e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 68689 AAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAG 68748 || ||||||||||| |||| || |||||||| ||||| |||| || || || ||||| | Sbjct 4 AACGAGATTGGGGACATGCTAAAGATTACGTTGAAGCGATGTATTTAATACTTCAACAGG 63 Query 68749 ATACTCCGGATGACTATGTGATTGCAACAGGGAAAACAACGAGCGTTCGTGAGTTCGTGA 68808 ||| || || ||||| || |||||||| || ||| || | || || ||||||||| Sbjct 64 ATATACCAGACGACTACGTTATTGCAACGGGTGTAACTACACGTGTGCGAGAGTTCGTGC 123 Query 68809 AAATGGCATTCGGTG 68823 |||||||| |||| Sbjct 124 GTATGGCATTTGGTG 138 >seq38326 Length=18890 Score = 95.1 bits (104), Expect = 3e-14 Identities = 217/325 (67%), Gaps = 4/325 (1%) Strand=Plus/Minus Query 149169 TTCGTCGGCATGACTGAGACGAAATTACATCCATATTGTTTTCTGTAAGCATCACACATC 149228 || || ||||| || |||| | ||||||||||||||| | ||||||||| ||||| Sbjct 10774 TTAGTAGGCATCACCGAGATATAGTTACATCCATATTGTGCACGGTAAGCATCGCACATT 10715 Query 149229 TCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTGGGTTCGAGAAATCCTGTC 149288 | || || || ||||| || || ||||| || | ||||| || || || || || || Sbjct 10714 TTTATGCCTGCAATTTTAGCAATGGCGTAAGGCTCATTAGTAGGCTCAAGTAAACCCGTT 10655 Query 149289 ATCAGATATTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGGTAAATGCAACTGCTACCG 149348 | ||| || || ||||| | || | | | || ||| || || || ||||| || Sbjct 10654 AACAGGTAATCCTCCTTTAATGGCTGTGGCGCCATTTTAGGATAGATACAACTTGATCCT 10595 Query 149349 AGAAACACGAGTTT--TTTCACTCCGAACATTTTGGACGCATGAATGACATTCGTCTGAA 149406 | ||||| || || || |||| || | | || | ||| || || || | || | Sbjct 10594 AAAAACATTAGCTTGGTTACACTATTAAGA--TACGATGAATGTATAACGTTATTTTGTA 10537 Query 149407 TCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTGTTCGCGTGAATACCTCCTA 149466 | ||||| |||| | ||| ||| | | | | ||| ||||| ||| || || | Sbjct 10536 TTTGAAGATTCTCGTACAAAAAGTCGGCGCGATACGTGTTATTCGCTACAATGCCGCCCA 10477 Query 149467 CTTTTGCAGCCGCGAGAAATACGTA 149491 |||| ||||| || ||||| || || Sbjct 10476 CTTTAGCAGCAGCAAGAAAAACATA 10452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101308657589350