Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq110395 102 8e-17 seq70823 86.0 6e-12 >seq110395 Length=10286 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 ||||| | |||||||| || || || |||||||| | || ||||| ||||||| | | Sbjct 10189 AGATGGAGGGTCGATTCCTTCTGGATATTGTAATCGGAGAGCGTGCGGCCGTCTTCCAAC 10130 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 |||||||| ||| |||| || |||||||||||||| || || ||||| || || || || Sbjct 10129 TGCTTGCCTGCAAAAATCAGGCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATC 10070 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || ||| || || | || || | || || || | || | |||||| || Sbjct 10069 TTAGCCTTGACGTTATCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTCCCA 10010 Query 64418 GTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || || ||||| |||||||| Sbjct 10009 GTGAGCGTCTTGACGAATATTTGCAT 9984 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | || || | ||| | || || || || || |||||||| || | | Sbjct 9982 CCGCCGCGAAGACGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 9923 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| ||| |||| || |||||||||||||| | || || ||||| || ||||| || Sbjct 9922 AGGGTACGCCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCGGGGGGG 9863 Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359 || ||||| || || || ||||| Sbjct 9862 ATGCCTTCCTTATCCTGGATTTT 9840 >seq70823 Length=785 Score = 86.0 bits (94), Expect = 6e-12 Identities = 87/112 (78%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||| |||||||||||||||| | |||| | || | ||||||| Sbjct 322 TGAAGGGTAGACTCTTTCTGAATGTTGTAATCTGAAAGAGTGCAGCCATCCTGAAGCTGC 263 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTT-CTTTTTCT 64351 ||||| ||| | ||||| | ||||||||| ||||| || |||| ||| |||| Sbjct 262 TTGCCAGCAAAGATGAGACACTGCTGGTCAGGAGGGATGCCTTCCTTGTTCT 211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498950287482440