Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_010355.1 Length=62337 Score E Sequences producing significant alignments: (Bits) Value seq47985 111 6e-20 seq109536 100 1e-16 seq104720 96.9 1e-15 seq108448 89.7 2e-13 >seq47985 Length=581 Score = 111 bits (122), Expect = 6e-20 Identities = 209/300 (70%), Gaps = 12/300 (4%) Strand=Plus/Minus Query 22291 CGCTTCGTGGCTGATGCGCCGCGCGACGGTCGGCGCGGTCATGCT-GCTGAAGGACGGCG 22349 ||||||||| ||| |||||| |||||| |||| || ||| | | ||||||| Sbjct 293 CGCTTCGTGA-TGAACCGCCGC---ACGGTCAGCGCCGTG-TGCAAGTTCAAGGACGCGC 239 Query 22350 ACGGCCAGTACATCTGGCGTCCGGGCCTGGAGGCTGGCAAGCCGTCCACCCTGCTCGGCT 22409 | ||| | ||||||||| ||| |||| || | ||| || || | | ||||||||||| Sbjct 238 AAGGCAACTACATCTGGAACGCGGCCCTGCAGCCGGGCCAGTCGGCGAGCCTGCTCGGCT 179 Query 22410 CCCCGGTCTATCAGGCTGCGGACATGCCGGCGGTTGGCGCGGGCGCC--CTGCCC-ATCG 22466 ||||||| || | || |||||||| | ||||| | | ||| || |||| Sbjct 178 TCCCGGTCACCGAGATCGAGGCCATGCCGGACGC---CGCGGCCAACACCTGTCCGATCG 122 Query 22467 CCTTCGGCAACTTCCGCGCCGGCTACACCGTCGTGGATCGCCTGGGCATCACCGTCCTGC 22526 | |||||| ||||| |||||| |||| || ||| ||| | || |||| Sbjct 121 CGTTCGGCGACTTCGAGAAGGGCTACCTGATCGTCGACCGCGCCGGCGTGCGGGTGCTGC 62 Query 22527 GCGACCCCTACTCGGCCAAGCCCTTCGTGGAGTTCTACAGCCGGAAGCGCGTCGGCGGCG 22586 ||||||| || ||||||||||| |||| |||||||| | |||||||||||||||| Sbjct 61 GCGACCCGTATTCGGCCAAGCCGCACGTGCTGTTCTACACCACCAAGCGCGTCGGCGGCG 2 >seq109536 Length=21924 Score = 100 bits (110), Expect = 1e-16 Identities = 120/161 (75%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 6469 TTCGTCGAAAGAATAGAACGACTTGAGGAGGAAAAGA--GCGGTCTCCAGGAGGACATCA 6526 |||||||| | || ||||| |||||||| |||||| ||| || || || ||||||| Sbjct 1961 TTCGTCGAGCGCATCGAACGCCTTGAGGAAGAAAAGCAGGCGCTCGCC--GACGACATCA 2018 Query 6527 AGGAAGTCTACTCGGAAGCCAAGGGCACCGGGTTCGACGTCAAGATCATTCGGCAGATCA 6586 |||| |||||||| || || || ||||||| | |||| ||||||| | || | | | Sbjct 2019 AGGATGTCTACTCCGAGGCAAAAAGCACCGGCTACGACACCAAGATCCTCAAGCGGGTAA 2078 Query 6587 TCCGCTTGCGGAAGATGGACAAGGCCGACCGGCAGGAACAG 6627 |||| | ||||| |||||||||||| || | |||||| Sbjct 2079 TCCGTATCCGGAAACAGGACAAGGCCGAGCGCGAAGAACAG 2119 >seq104720 Length=876 Score = 96.9 bits (106), Expect = 1e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 6460 CTGAAATCCTTCGTCGAAAGAATAGAACGACTTGAGGAGGAAAAGAGCGGTCTCCAGGAG 6519 ||||| || || |||| | | || || ||||||| ||||||| || || |||| Sbjct 638 CTGAAGTCGATCATCGATCGCGTCGAGCGCCTTGAGGTCGAAAAGACCGAGATCATGGAG 697 Query 6520 GACATCAAGGAAGTCTACTCGGAAGCCAAGGGCACCGGGTTCGACGTCAAGATCATTCGG 6579 | || |||||||||||| | || |||||||||| ||| ||||||||||||||| | | Sbjct 698 CAGATGAAGGAAGTCTACGCCGAGGCCAAGGGCAACGGCTTCGACGTCAAGATCCTCAAG 757 Query 6580 CAGATCATCCGCTTGCGGAAGATGGACAAGGCCGACCGGCAGGAACAGCGCGCCATCCTC 6639 || || | ||| | || ||| |||| ||| | || |||||| | ||| ||||| Sbjct 758 AAGGTCGTGCGCATCCGCAAGCAGGACCGCGCCAAGCGCCAGGAAGAAGACGCGATCCTG 817 Query 6640 GAAATGTA 6647 || |||| Sbjct 818 GACCTGTA 825 >seq108448 Length=47011 Score = 89.7 bits (98), Expect = 2e-13 Identities = 197/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 22335 TGCTGAAGGACGGCGACGGCCAGTACATCTGGCGTCCGGGCCTGGA--GGCTGGCAAGCC 22392 |||||||||| || |||||| || |||||| ||| || | | ||| ||| | Sbjct 25830 TGCTGAAGGATAGCCTCGGCCACTATCTCTGGCAGCCG--CCGGCATTGGCAGGCGCTCA 25773 Query 22393 GTCCACCCTGCTCGGCTCCCCGGTCTATC-AGGCTGCGGACATGCCGGCGGTTGGCGCGG 22451 | | || ||| | || |||| | | || |||| | ||||||||| | | | || | Sbjct 25772 GGCAACGCTGATGAACTTCCCGCT-TGTCGAGGCGGAAGACATGCCGCAGATCGCGGCCG 25714 Query 22452 GCGCCCTGCCCATCGCCTTCGGCAACTTCC-GCGCCGGCTACACCGTCGTGGATCGCCTG 22510 || | | | || || |||||| |||||| |||| ||||| |||||| |||||| | Sbjct 25713 GCAGCTTCTCGATAGCATTCGGCGACTTCCAGCGC-GGCTATCTCGTCGTCGATCGCATC 25655 Query 22511 GGCATCACCGTCCTGCGCGACCCCTACTCGGCCAAGCCCTTCGTGGAGTTCTACAGCCGG 22570 ||| | | | || ||||| ||||| |||||||| ||||| ||||||| Sbjct 25654 GGCCTGCGCCTGCTCCGCGATCCCTATAGCGCCAAGCCGTTCGTTCTCTTCTACACGACC 25595 Query 22571 AAGCGCGTCGGCGGCGACGTGGTGAACTTCGAAGCCTTCAAGCTGATG 22618 |||||||||||||||| |||| | ||||| | || |||| ||| || Sbjct 25594 AAGCGCGTCGGCGGCGGCGTGCAGGACTTCAACGCGATCAAACTGTTG 25547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199083423603978