Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_011103.1 Length=60195 Score E Sequences producing significant alignments: (Bits) Value seq107754 134 5e-27 seq59739 123 1e-23 >seq107754 Length=5709 Score = 134 bits (148), Expect = 5e-27 Identities = 379/567 (67%), Gaps = 44/567 (8%) Strand=Plus/Plus Query 43054 TTCGCGATCTCGACGGAAGAGACTAGATTTTACCTAAACGGCATCTTCCTGCACCTGCAT 43113 ||||||||||| || || ||||| | | |||||| |||||||||| | ||| | Sbjct 4899 TTCGCGATCTCCACCGAGGAGACGCGCTATTACCTGAACGGCATCTATTTCCACACGGTC 4958 Query 43114 GAAGACGGCGACTACTT---CATCCGTGCGGTAGCCACCGACGGACACCGCCTGTCACGG 43170 |||| |||| | || | | ||||||| || ||||| ||||| ||||| ||| | | | Sbjct 4959 GAAGTCGGCAGCGACCTGCGCTTCCGTGCCGTGGCCACGGACGGCCACCGGCTGGCGCAG 5018 Query 43171 CATCAG---GCTGCCTATCCCGGCGAAGATG-CATTCAAGGGCGTGATCGTGCCGCGAAA 43226 || | ||| | |||| || | ||| | |||||| ||||||||||| || Sbjct 5019 GCCGAGTTCGTCGCCCCGCATGGCGCCGAGGGCATGCC-GGGCGTCATCGTGCCGCGCAA 5077 Query 43227 AACGGTCGGCCTGCTTCCGAA--------AGGGACTGTGCGC------GTCAGCG----T 43268 || || ||| | | | ||| ||| | | ||| | | | | | Sbjct 5078 GACCGTGGGCGAGATCCAGAAGCTTGTCGAGGATCCGGACGCACAGGTGACGGTGGAACT 5137 Query 43269 CTCAGAAACGAAGATCCGCATTGCGTCTGGTGAATTTGTTCTCACCAGCAAGCTGATCGA 43328 ||| || | |||||||| | ||| || || | || || ||| |||||||||||| Sbjct 5138 CTCCGAGAGCAAGATCCGTCTGTCGTTCGGCGAGGTGGTGCTGACCTCCAAGCTGATCGA 5197 Query 43329 CGGCACTTTCCCTGACTATCAGCGCGTCATCCCCACCCAG---AACGACAAGAAGATCGT 43385 |||||| ||||| |||||| |||||||||| | ||| ||||||||| | | Sbjct 5198 CGGCACCTTCCCGGACTATGGCCGCGTCATCC---CGCAGGGCAACGACAAGGACCTGAC 5254 Query 43386 CTTCGGCAGCGATGACATGCGCCAGGCAGCC-TCG--CGCGTCTCTGTGATCTCGTCTGA 43442 | ||| || | || || |||| || ||| ||| |||||||| ||| ||||| || Sbjct 5255 CGTCGACAAGGCCGA-ATTCGCC--GCCGCCGTCGATCGCGTCTCGACGATTTCGTCGGA 5311 Query 43443 GCGTGGCCGCGCGGTGAAGTTATCCTTC-GCGGAGGGGGAAGC-GAAGCTGGCCGTGAGC 43500 ||| || || || |||||| | || || ||| ||| | || || |||| | |||| | Sbjct 5312 GCGCGGGCGTGCCGTGAAGCTCACCGTCGGCGAAGGCCG--GCTGATGCTGTCGGTGACC 5369 Query 43501 AGTCCGGAAACCGGAAGCGCCACCGACGAAATCTTCGTGAACTACGATGGCGACCCGATC 43560 | |||||| |||| || ||||| ||| || |||| | || ||| ||| ||| || Sbjct 5370 AATCCGGATTCCGGCTCGGCAACCGAAGAACTCGGCGTGGAATATGATTCCGAGCCGCTC 5429 Query 43561 GATATCGGATTCAAC-GCGGCCTATCT 43586 |||||||| |||||| || | |||||| Sbjct 5430 GATATCGGTTTCAACAGCCG-CTATCT 5455 >seq59739 Length=434 Score = 123 bits (136), Expect = 1e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 52466 GTCCTCGATCCTTTCATGGGGTCCGGCACAACCGGAGTCGCCTGCGTAAAAGCTGGCCGC 52525 ||||| || || |||||||| |||||||| ||||| ||||||||||| || ||||||| Sbjct 189 GTCCTTGACCCCTTCATGGGTTCCGGCACCACCGGCGTCGCCTGCGTCAAGCTTGGCCGC 248 Query 52526 TCTTTCATCGGCATTGAGCGCGAGCCGTCTTATTTTGAGATCGCCTGCGAACGGATCCGC 52585 ||||||||||| ||| || | |||||| || || |||||||| || || ||| Sbjct 249 AAGTTCATCGGCATCGAGATTGACGAGGGTTATTTCGACATAGCCTGCGAGCGCATTCGC 308 Query 52586 AAGGCGCAAGCTCAGCCCGACATGTTCATCG 52616 ||||| | || ||||| ||||||||||||| Sbjct 309 AAGGCCTACGCCCAGCCAGACATGTTCATCG 339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192248198294834