Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_011272.1 Length=153894 Score E Sequences producing significant alignments: (Bits) Value seq108213 86.0 6e-12 seq111115 82.4 8e-11 seq40814 82.4 8e-11 seq10285 82.4 8e-11 >seq108213 Length=2622 Score = 86.0 bits (94), Expect = 6e-12 Identities = 115/155 (74%), Gaps = 5/155 (3%) Strand=Plus/Plus Query 112491 TGCCTGTGCGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGC 112550 |||| ||| |||| ||||||||| || | || || |||||||| ||||| || Sbjct 1568 TGCCGGTGGGGCC-GGGCCGTGGTTCGGGCGCCGGTTCGCTGGTGGCCTACTCGCTGCTG 1626 Query 112551 ATCACCTCGATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAA-CCCGGA 112609 |||||| |||| ||| || ||||| | ||| |||||||||||||| |||| |||| | Sbjct 1627 ATCACCGACCTCGATCCGCTCCAGTACAATCTGCTGTTCGAGCGCTTCCTCAATCCCGAA 1686 Query 112610 C-CGCCCCGACTTCCCCGACATCGACGTCGACTTC 112643 | || ||| | |||||| ||||| |||||||| Sbjct 1687 CGCGTGTCGA--TGCCCGACTTCGACATCGACTTC 1719 >seq111115 Length=66179 Score = 82.4 bits (90), Expect = 8e-11 Identities = 164/235 (70%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 150417 TGCGCGAG-GTGGTGATCAGCGACGAGCACCCCAACCCGACGCCGATCGCCATCGTGCTC 150475 |||||||| | | || |||| ||| ||||| ||| || | |||| | ||| ||| Sbjct 40214 TGCGCGAGTGCCGCGA-CAGCACCGACCACCCGAACGCGCTGGGCATCGTCTTCGCGCTG 40156 Query 150476 GATGTCACCGGGTCCAA---CTACACCGCCGC-CGTGGCCGTGCACGCCAAGCTGCCGCA 150531 || || ||||| || | | ||| | |||| | || | ||| | | ||||| || Sbjct 40155 GACGTGACCGGCTCGATGGGCGACATC-CCGCGCATGCTGGCGCAGCGCGACCTGCCCCA 40097 Query 150532 GTTGTTCGGCCTGCTGCAGCGCAAGGGCCTGATCGAGGACCCGCAGATTCTCATCGCGGC 150591 ||| | |||||||| | |||| | ||| |||||||||||||| | ||| || ||| Sbjct 40096 GTTCATGGGCCTGCT-CGGCGCCTGCGCCG--TCGAGGACCCGCAGGTGCTCTTCATGGC 40040 Query 150592 CACCGGTGATGCCAACAGCGACCGGGTGCCGCTGCAGGTCGGCCAGTTCGAGTCC 150646 | ||||| |||| | ||| | |||||||||||| ||||||||||||||| Sbjct 40039 CGTGGGTGACGCCACCTCGGACAACGCGCCGCTGCAGGTGGGCCAGTTCGAGTCC 39985 >seq40814 Length=282 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 89818 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 89877 ||| | |||| |||| ||| || |||| ||||||||||||| ||||||||||||||||| Sbjct 29 CGGAGCGTAGCGCAGTCTGGTAGCGCGCCTGGTTTGGGACCAGGATGTCGCAGGTTCGAA 88 Query 89878 TCCTGTCACCCCGAC 89892 ||||| | | ||||| Sbjct 89 TCCTGCCGCTCCGAC 103 >seq10285 Length=766 Score = 82.4 bits (90), Expect = 8e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 112501 GCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCGA 112560 ||| |||||||||||| || | |||| |||| |||||| ||||| ||||| | Sbjct 599 GCCAGGGCCGTGGCTCGGCGGCCAACTCGGCGGTCTGCTACGTGCTGGGCGTCACCAGCA 540 Query 112561 TCGA-CCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGCCCCGAC 112619 | || ||||| | ||||||| |||||||||||||| | || ||| ||| ||| Sbjct 539 TTGATCCCGAGCGCA-ACGACCTCTTGTTCGAGCGCTTCGTATCCCAGGAGCGCAACGAG 481 Query 112620 TTCCCCGACATCGACGTCGACTTCCAG 112646 ||||||||||||||||||||| || Sbjct 480 CCGCCCGACATCGACGTCGACTTCGAG 454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 491648451253840