Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_011287.1 Length=58554 Score E Sequences producing significant alignments: (Bits) Value seq109371 176 2e-39 >seq109371 Length=32687 Score = 176 bits (194), Expect = 2e-39 Identities = 472/710 (66%), Gaps = 35/710 (5%) Strand=Plus/Plus Query 43062 CAACAACGACTGCGTACCCGAAACCGAGTCGATGGA---CGACAACTCGGTGGACCTGAT 43118 |||| |||||||||| | || ||| | |||| ||||| | || | |||| | Sbjct 22916 CAACGACGACTGCGTGCAGGAGACCCGGCGCATGGCGTCCGACAGC---GTCGGCCTGGT 22972 Query 43119 CGTCACCAGCATTCCGTTCTCGAACCACTACGAATACACGCCGAGCTACAACGACTTCGG 43178 | | |||||||| || ||| | || ||||| ||| |||||| || | ||||||||| Sbjct 22973 CCTGACCAGCATCCCCTTCAGCACGCAGTACGAGTACTCGCCGAACTTCGCCGACTTCGG 23032 Query 43179 CCACACCGACGACAACGCCCATTTCTGGGCCCAGATGGACTACCTCACGCCGCAACTGCT 43238 |||||||| ||||| || |||| |||||||||||||| |||| | ||||| Sbjct 23033 GCACACCGATAGCAACGAGCACTTCTTCCAGCAGATGGACTACCTGGTGCCGGAGCTGCT 23092 Query 43239 GCGGGTCCTCGCTCCTGGCCGGATCTATGCCTGCCACGTCAAGGACCGCATCTTGTT--- 43295 ||| || || || ||| || | || |||||||||| |||||||| || Sbjct 23093 GCGCGTGCTGATGCCAGGCAGGGTGGCGGCGATCCACGTCAAGAACCGCATCGTGCCGAG 23152 Query 43296 CGGCAACGTCACCGGCGCAGGCGTCCCCACCGTCTCCCCGTTCCACGCCGAGGCGAT--- 43352 ||||| ||| |||| ||| ||| |||| | ||||||| || || || | Sbjct 23153 CGGCATGGTCGAGGGCGTTGGCTTCCAGACCGAGTACCCGTTCGACATGGACACGCTGGC 23212 Query 43353 ---CTTTCACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTGGTCACCGA 43409 ||||| |||| ||||||||| ||||| ||||| | || | |||| || Sbjct 23213 CTGCTTTC---GCCGG---CACGGCTTCCACTACATCGGCCGCAAGCCCATCATCACGGA 23266 Query 43410 TGTGGTGCGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGACGC 43469 ||||| ||||| ||||||||||| ||| ||||||||||| |||||| ||||| |||| Sbjct 23267 CGTGGTCCGGGAGAACAACCAGACCTACAGGCTGGGCTGGAGCGAGCAATGCAAGGACGG 23326 Query 43470 CACCAAGATGGGCGTTGGCTCCCCGGAATACGTTCTGCTGTTCCATAAACCGCAGACAGA 43529 | | |||||| | ||| || ||| | ||||| |||| || ||| ||| || Sbjct 23327 TAGCCGCATGGGCTTCGGCCTGTGCGAGTACCTGCTGCTCTTCCGCAAGGCGCCGACCGA 23386 Query 43530 CAGGTCGAAG-GGATACGCCGACACCCCCGTCACCAAATCCAAGGACGACTACAGCCGTG 43588 | | | | | || || |||||| || ||| ||| ||||| ||| ||| ||| Sbjct 23387 C-GCTAGCCGTGGCTATGCCGACCTACCGGTCTTCAAGGACAAGGCCGAGTACTCCCGCC 23445 Query 43589 CCCGTTGGCAGGTGGACGCGCACGCGTT---CTGGCGCTCGAGCGGCAACAGGTCACTGA 43645 | || |||||| | || || |||| || | | ||||| ||| | | | |||| Sbjct 23446 CGCGCTGGCAGCTCGATGCCCACGGCTTTGCCCGCAGCTCGGGCG---ATCGCTTGCTGA 23502 Query 43646 CAGCCGACGAGCTCGCCGCGATG--CCACCAGACCAGCTGGCCGCACTGTTCACCAAGCA 43703 | |||| || |||| || | || |||| | || || | ||||| |||||| Sbjct 23503 CGCCCGAGGAACTCGACGGGCTGACCCACGCGGACATCTTCAAGA--TGTTCCGCAAGCA 23560 Query 43704 CAGCCTGCAGGACGTCTACGACTACCAGTCAC-ACGTCCGCATCGGTGAG 43752 | | || | || ||||||| | || ||| |||| |||||||||||| Sbjct 23561 CTCCATGGAACGGGTGTACGACTTCGAG-CACGACGTGCGCATCGGTGAG 23609 Score = 104 bits (114), Expect = 9e-18 Identities = 232/339 (68%), Gaps = 16/339 (5%) Strand=Plus/Plus Query 41218 CCGGGCGAGATTCACTCGATGTTGTTGCCGCACCAG--CGCGATCTGGTGCGTTGGGCGG 41275 |||| |||||| || || ||||| | ||||||| |||| | || ||||| Sbjct 21510 CCGGCCGAGATCAACCCGCTGTTGAAGTTGCACCAGATCGCGGCC--GTCATCTGGGCAA 21567 Query 41276 TC-GCCGGGGGTAGGCGCGCGATCTTCGCGGCGTTCGGCCTGGGCAAGACGGTGATGCAG 41334 || ||| || | ||| ||| | ||| ||| |||||||||||||||||| | |||| Sbjct 21568 TCCGCCTCGGCTGTGCG-GCGCTGTTCATGGCCTTCGGCCTGGGCAAGACGTTCGTGCAA 21626 Query 41335 CTGGAGATCGTGCGCCT-GT-CGCTAGCCAAGCATGGCGGTGGGCGAGGCTTGATCGTGA 41392 |||||||||||||| | || ||| || |||| |||||| ||| ||||||| | Sbjct 21627 CTGGAGATCGTGCGGATCGTCCGCGCGC---GCAT--CGGTGGCATGGGCCTGATCGTCA 21681 Query 41393 TGCCGCTGGGCGTGCGGATCGAGTTCGCCCACGACGCCAACATGCTGGGCATCGAAACCC 41452 | || ||| || || ||||||| | |||||| | |||||||||| | | Sbjct 21682 TCCCACTGTCGGTCCGCCAGGAGTTCGTGCGCGACGCGGCGAAGCTGGGCATCAAGGTCA 21741 Query 41453 GGTTTGTTCGCCGCACAGAAGA---AGTCGGCGGCGACGGTATCTACCTCACCAACTACG 41509 ||| | ||| || || || | || | || || ||||||||||||||||||| Sbjct 21742 AGTTCATCCGCACCATCGACGAGGCTGACGACCCCGCGGGCATCTACCTCACCAACTACG 21801 Query 41510 AGAGCGTTCGCGATGGAAAGCTCGACCCGACACTGTTCA 41548 || || || || || ||||| ||||||| ||||||| Sbjct 21802 AGTCGGTGCGGGACGGCAAGCTGGACCCGATGCTGTTCA 21840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187003932566792