Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq81523 224 3e-54 seq83492 183 8e-42 seq109170 89.7 1e-13 seq23214 84.2 6e-12 >seq81523 Length=13279 Score = 224 bits (248), Expect = 3e-54 Identities = 512/754 (68%), Gaps = 26/754 (3%) Strand=Plus/Plus Query 8418 CGACGGTATGCATGGCGGTGAGTTGATTATCGTCGGCGGACGGCCGTCGATGGGAAAGAC 8477 || ||| |||| ||||| || |||| | | | || || ||||||||||| ||||| Sbjct 1429 CGCCGGCCTGCAGGGCGGCGACCTGATCGTGCTGGCCGCGCGCCCGTCGATGGGCAAGAC 1488 Query 8478 CTCCCTCGCAATGAATATCGCAGAGCATGTCGCCATCGTGTCGAGATTGCCCGTCGGCGT 8537 | |||| | || ||||| ||| | ||||||||| | | ||||||||| | | Sbjct 1489 GGCGTTCGCCGTCAACATCGCCGAGAACGTCGCCATCAACGAGGGCCTGCCCGTCGTCAT 1548 Query 8538 CTTGTCGCTGGAAATGCCGACCGAACAGTTGACCATGCGCATGCTGGCGTCGACATC--C 8595 || ||| |||||||| ||| ||| | || |||| ||| ||| || |||| | Sbjct 1549 CTACTCGATGGAAATGGGCGCCGCGCAGCTCGCCCTGCGTATGGTGGGCTC--CATCGGC 1606 Query 8596 CGTATCAGCCAAAACAGGCTGCGAACCGGTCGCCTCGAGGATGACGACTGGCCGCGCCTG 8655 || ||| ||| | | ||||| ||||| | | |||| ||||| ||| |||||| Sbjct 1607 CGCATCGACCAGAGCCACCTGCGCACCGGCCAGTTGAAGGACGACGAGTGGGGCCGCCTG 1666 Query 8656 ACGCGTGGCGTCGAGCTGATGGCCGACGCGCCCGTGCATATTCT----CGATAGCTCCGC 8711 || | |||||| | | | | | || |||| ||| ||| ||| | | Sbjct 1667 TCGGAGGCCGTCGACAAGCTCGGCAAGGCCA----GCATCTTCATCGACGAGAGCCCGGG 1722 Query 8712 GATCACCCCGTCGAAATT-CAAGTCCGAGTTGCGGCGCTTGTATCGCGAATGCGGCCGGC 8770 | | ||| ||| | | | | ||| | ||| ||| | ||| ||||||| || Sbjct 1723 CCTGAGCCCCTCGGAGGTGCGTGCCCGCGC-GCGCCGCCAGGCCCGCATTTGCGGCCAGC 1781 Query 8771 TCGGGATGATTGTCGTTGACTACCTGCAGCTGATGTCGGGTGACGGCGGCGG-ATCT--G 8827 |||| | || ||| | |||||||||||||| ||||| || |||||||||| | | | Sbjct 1782 TCGGCCTCATCGTCATCGACTACCTGCAGCTCATGTCCGGCAACGGCGGCGGCAGCGAGG 1841 Query 8828 AAATGCGGGCCACCGAGGTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAAC 8887 | | || || |||| | ||| |||||| || |||| ||||| | || ||||| | Sbjct 1842 AGAACCGCGCGACCGTGCTCGGCGAAATCTCCCGCGGCCTCAAGGCTCTGGCCAAGGAGC 1901 Query 8888 TCGACGTTCC-GATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAAC 8946 | || || || | ||||||||||||| ||||| || || | | ||| | ||||| || Sbjct 1902 T-GAAGTGCCCGGTCATCGCGCTGTCCCAGCTCAACCGCTCGGTGGAGCAGCGCCCCGAC 1960 Query 8947 AAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTG 9006 |||||||| | ||||| || |||||||| || || || |||||||||||||||||| | Sbjct 1961 AAGCGGCCGATGATGTCTGACCTGCGCGAATCCGGCGCCATCGAGCAGGATGCCGACATC 2020 Query 9007 ATCCTCTTTATCTACCGCGATGAGGTCTATAACCCCG-ACAGCGCA--GATCGCGGTACG 9063 ||| | || ||||||||||| ||| ||| | | | | || ||| || | || | Sbjct 2021 ATCATGTTCATCTACCGCGACGAGTACTACACCAAGGAAGAGTGCAAGGAACCGGGCGTG 2080 Query 9064 GCCGAAATCATCATTGCGAAGCAGCGAAACGGGCCGATTGGCACCGTACGGCTCGCATTC 9123 ||||| |||||||| || |||||||| ||||| ||| | ||||| || ||| ||| Sbjct 2081 GCCGAGATCATCATCGCCAAGCAGCGTAACGGCCCGGTGGGCACGGTGAAGCTGATGTTC 2140 Query 9124 CAGAACGCA-ACA-ACCCGGTTCGAGAATTTCGC 9155 ||| |||| || ||| ||||||||| |||| Sbjct 2141 CAG--CGCATGCACACCAAGTTCGAGAACCTCGC 2172 >seq83492 Length=1330 Score = 183 bits (202), Expect = 8e-42 Identities = 267/375 (71%), Gaps = 3/375 (1%) Strand=Plus/Plus Query 8742 GCGGCGCTTGTATCGCGAATGCGGCCGGCTCGGGATGATTGTCGTTGACTACCTGCAGCT 8801 ||| || ||| ||| | |||||| ||| || |||| || | ||||| ||||||| Sbjct 100 GCGCCGGCTGTCGCGCCAGTGCGGCAAGCTGGGCCTGATCATCATCGACTATTTGCAGCT 159 Query 8802 GATGTCGGGTGACGGCGGCGGATCTGAAATGCGGGCCACCGAGGTCGCCGAAATATCGCG 8861 |||| ||||| | | || | | || | || || ||||| || |||| || ||||| Sbjct 160 GATGACGGGTAGC--CAGCCGGGC-GATAACCGCACCGCCGAGATCTCCGAGATTTCGCG 216 Query 8862 CGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAA 8921 || || | || |||||| | | ||| | ||||||||||||||||| || Sbjct 217 TAGCCTTAAGGGCCTGGCCAAGGAATTGCATTGCCCGGTGATCGCGCTGTCGCAGCTGAA 276 Query 8922 TCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGG 8981 || | ||||||| | || || |||||||| ||||| |||||||| ||||||| ||||| Sbjct 277 CCGCGCGCTCGAGCAACGGCCGAACAAGCGTCCCGTGATGTCCGACTTGCGCGAATCGGG 336 Query 8982 TGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGATGAGGTCTATAACCC 9041 || ||||||||||| |||||||| ||| | || | |||||||| |||||||| ||||| Sbjct 337 CGCAATCGAGCAGGACGCCGACGTCATCATTTTCCTGTACCGCGACGAGGTCTACAACCC 396 Query 9042 CGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAGCAGCGAAACGGGCCGAT 9101 ||| | || || || ||||| || ||||| | || ||||| ||||| ||||| Sbjct 397 CGATTCACCCGACAAGGGCACCGCCGAGATTATCATCGGCAAACAGCGTAACGGCCCGAT 456 Query 9102 TGGCACCGTACGGCT 9116 ||| | | ||||| Sbjct 457 CGGCGCGATCCGGCT 471 >seq109170 Length=82758 Score = 89.7 bits (98), Expect = 1e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 8878 GCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAAT 8937 |||||||| ||||| || || || | |||||||||||||| || | | || ||| Sbjct 53895 GCGAAGGAGCTCGAAGTACCTGTCGTTGCGCTGTCGCAGCTGTCGCGCCAGGTGGAAAAT 53836 Query 8938 CGCCCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGAT 8997 ||| |||||| ||| | | ||| ||||||| ||||| | |||||||| ||| Sbjct 53835 CGCGACGACAAGCATCCCCAACTCGCAGATTTGCGCGAATCGGGCTCCATCGAGCAAGAT 53776 Query 8998 GCCGACGTGATCCTCTTTATCTACCGCGATGA 9029 ||||||||| || | || ||||||||||| || Sbjct 53775 GCCGACGTGGTCATGTTCATCTACCGCGAGGA 53744 >seq23214 Length=11792 Score = 84.2 bits (92), Expect = 6e-12 Identities = 125/174 (72%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 8306 TGCAGCCAGCGTTGACGCGTGTGGTCGAGCGCATCGACGAGCTGTTTCACCGCGAGGACC 8365 ||||||| |||||||| |||||||||||||| |||||| ||| |||||| | | Sbjct 176 TGCAGCCGCTGTTGACGCAGGTGGTCGAGCGCATTGACGAGTTGTACAGCCGCGATAATC 117 Query 8366 GCGGCGGGATCACCGGAACGCCGACCGGATTTGTCGACTTAGA-CGCGCGA-CTCGACGG 8423 || |||||||| ||||||||| || ||||| | || ||| || |||| || Sbjct 116 AATCCGAAATCACCGGCGTGCCGACCGGCTTCATCGACCTCGACCGCATGACCTCG--GG 59 Query 8424 TATGCATGGCGGTGAGTTGATTATCGTCGGCGGACGGCCGTCGATGGGAAAGAC 8477 |||| || || || | ||||||| ||| || ||||||||||| ||||| Sbjct 58 CCTGCAGCCGGGCGACCTGGTGATCGTCGCCGGCCGTCCGTCGATGGGCAAGAC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127377174520596