Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq107653 176 6e-39 seq93596 91.5 2e-13 seq107657 86.0 8e-12 seq107883 82.4 9e-11 >seq107653 Length=176415 Score = 176 bits (194), Expect = 6e-39 Identities = 472/717 (66%), Gaps = 43/717 (6%) Strand=Plus/Plus Query 67954 CGAATGGGTTCGCAACCATGCCGTAGCGGGTCTTGAAGCCAATCTTAGGCTGGAAGGTCT 68013 |||| |||||||| |||||||||||||||||||||||||| || ||| |||| | Sbjct 132464 CGAAGGGGTTCGCGACCATGCCGTAGCGGGTCTTGAAGCCGATGCGAGGACCGAAGTTAC 132523 Query 68014 CAGGATCGATGCTGCG-GAGCAT-CTGGAGGGGAACATATGGGCAGTAGAATAGACCTGC 68071 | || | | | || || | | |||||| ||||| || ||||||||||| | || || Sbjct 132524 CCGG--CCACACAGCACGAACCTGCTGGAGAGGAACGTACGGGCAGTAGAAGATGCCGGC 132581 Query 68072 GTCATATGGTGAAGAACCCTTATAACCAACA-ACATAGTAGTGGTTGTTGGAAACGTTAG 68130 ||| || || | | |||||| || || || |||| || ||| || | | Sbjct 132582 GTCGTAAGGCGTCGGACCCTTGTAGCCTACGCACAT-------GTAGTTTCCGCCGATCG 132634 Query 68131 CGGAATAAGGATCAACGTAAACCTTGATTCTGCCGTTCATGGTTCCGACTAGGAGGTTGC 68190 || || || || | ||| |||||||| | ||||||| | | || | | | ||||| Sbjct 132635 CG---TAGGGGTCGATGTAGACCTTGATGCGACCGTTCAGGATACCCGCGAAGGTGTTGC 132691 Query 68191 CAGTGTCATCAACTTCACCGATGGAAGGACCACCAGCGCCGCTTAGACCTGAGGAG-TAG 68249 | ||||| || || | | || |||| | | || | | || ||| ||| Sbjct 132692 CCGTGTCGTCGACCTGGAGGTTGT------CACC----CAGGTTCGGCATGGAGAGGTAG 132741 Query 68250 TCGAGGGTGC-CAGACATAGCGAGTGCAGAAGCAACATCAGCAGAAGTGATGATGAAGTT 68308 || || | |||| || || || || || || | ||| | || ||| Sbjct 132742 CCGGCGGCGTTCAGA----------GCCGATGCCACGTCCGCCGTGCAGATCAGGATGTT 132791 Query 68309 GCCCTTTCCTCTACGAGTCTGCTGAGCGATAGCGTTAGCA-TCACGCTCGATCTGGAACA 68367 ||||| || | | |||| || ||||| ||| ||| || |||||||| ||||| Sbjct 132792 ACCCTTGCCACGCCTCGTCTCCTTGGCGATCTGGTT-GCACTCGCGCTCGATGTGGAAAT 132850 Query 68368 TTAGACCCTTGAACTTCTCAACTGACCAACGTCCGTTTGAATCAACGTCGAGGTCGAAGA 68427 |||||||||||||||||||| ||||| || ||||| || || ||||| |||||||||| Sbjct 132851 ACAGACCCTTGAACTTCTCAACCGACCAGCGGCCGTTCGAGTCGACGTCCAGGTCGAAGA 132910 Query 68428 TACCAGCGTTAGCAACGTTGTTCTGAGCANNNNNNNNNNNNNNNNNGTAA--ACGGTACG 68485 || | ||| | || | |||| | || | || ||||| Sbjct 132911 AGCCCGGGTTGGTCGTGTCGATCTGCG--ATCCCTGCTTGGCGGAGGTCAGGACCGTACG 132968 Query 68486 AACGACTTCGCGGTTGATTTCAGCAAGGATCTCGCTGGAAAGAAGGTTAGCGAGCTCTTG 68545 ||| | ||||||||||| || || ||||||||| ||| || | ||| | |||||| Sbjct 132969 AACCGCCTCGCGGTTGATCTCGGCCAGGATCTCGGTGGCGAGGATGTTCGAGAGCTCAGC 133028 Query 68546 CTCAGCATCAAGACCATGGATTGCCTTGAGGTCTTGTGCTAGTTCTAGAGTGTACTCAGC 68605 ||| || || ||||| || | |||||| ||||| ||||| ||||| | | |||||| || Sbjct 133029 CTCGGCGTCGAGACCGTGTACTGCCTTCAGGTCCTGTGCCAGTTCCATCGAGTACTCGGC 133088 Query 68606 TCTGAGTGCTCTGGTCTTAGCGGTGACCGCAGTCTTCTCGATGCTGAAATCCATTTC 68662 || || | | |||| || ||||| | ||||||||||||||| |||| || Sbjct 133089 GGCCAGCGCGCGGCTCTTCGCCGTGACGGTGACCTTCTCGATGCTGAAGGCCATCTC 133145 >seq93596 Length=211 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 32006 GACTGGCGACTCAAGTAGGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTA 32065 || ||||||| | | ||||||||||||| ||||| ||||||||||||||| ||||||| Sbjct 86 GATTGGCGACCCCTGCAGGATTCGAACCTGCGACCACCTGCTTAGAAGGCAGGTGCTCTA 27 Query 32066 TCCAGCTGAGCTA 32078 ||||||||||||| Sbjct 26 TCCAGCTGAGCTA 14 >seq107657 Length=17533 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 31214 TCGGGGTGATAGGATTCGAACCTACGGCATCCGCCTCCCAAAGACGGCGCTCTACCAAGC 31273 ||||||||| ||||||||||||| |||| || || |||| || | ||||||||||| || Sbjct 10057 TCGGGGTGAGAGGATTCGAACCTCCGGCCTCTGCGTCCCGAACGCAGCGCTCTACCAGGC 10116 Query 31274 TGAGCTACACCCCGA 31288 ||||| ||||||||| Sbjct 10117 TGAGCCACACCCCGA 10131 >seq107883 Length=54593 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 31844 GAAGTTAATGGGCGATGAGGGATTCGAACCCCCGACCAATTGCGTGTAAAGCAACTGCGC 31903 ||| || |||||| |||||| |||||||||||||| ||||||||||||| | || | Sbjct 44886 GAAATTGGTGGGCGCTGAGGGGATCGAACCCCCGACCCGCTGCGTGTAAAGCAGCCGCTC 44945 Query 31904 TACCGCTGCGCTAATCGCCC 31923 |||||||| ||||| ||||| Sbjct 44946 TACCGCTGAGCTAAGCGCCC 44965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621260038751440