Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq109776 96.9 4e-15 seq109896 86.0 7e-12 seq58313 86.0 7e-12 >seq109776 Length=48066 Score = 96.9 bits (106), Expect = 4e-15 Identities = 196/284 (69%), Gaps = 9/284 (3%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAA-GCAAAGTCCAGGCATGAGTCCTCTTTT 119572 ||||| || || |||||||||||| || | ||| || |||||||| || | || Sbjct 3927 CCTTCGTCTCGGCTGATGAGCTCATTGGAAAATGTCAAG-CCGGGCATGAGACCGCGCTT 3985 Query 119573 CTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAA 119632 ||| |||||||| ||||| ||| || || |||||||| ||||| || || || Sbjct 3986 CTTCAGCCAAAAAATGGCCGCGAAAGAACCGGAGAAGAAGATCCCCTCAACCGCAGCAAA 4045 Query 119633 AGCGAATAGACGCTCAGCAAA--AGGTCGAGACTTGT-CGAA--CCACTTGAGAGCCCAG 119687 ||||| || ||||||||||| | ||| ||||| |||| ||| |||||||| Sbjct 4046 AGCGATGAGGCGCTCAGCAAACGAAGTC--TTCTTGTCCGAAATCCAGCGAAGAGCCCAT 4103 Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCA 119747 | || || |||| | ||||| | || | || || |||||||| | | |||| Sbjct 4104 TCTGCTTTGCGCTTGACACAGGGAATGGTCTCGACAGCGTCGAAAAGGTATTCACGTTCA 4163 Query 119748 GCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTC 119791 ||| || ||||| || |||||||||| ||||||||||| Sbjct 4164 GCAGGGTCTTTAATGTAAGTATCAATGAGAAGCGAGTAGGTCTC 4207 >seq109896 Length=22917 Score = 86.0 bits (94), Expect = 7e-12 Identities = 221/332 (67%), Gaps = 6/332 (2%) Strand=Plus/Minus Query 11668 CGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT 11727 ||||| || |||| || || ||||| |||||||| | |||||| || ||| | Sbjct 21396 CGCTTTTTCCCGATGGCATCGATCTCGTCGATGAAGATGATACAAGGCGCGTTCTTTCTC 21337 Query 11728 GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAG 11787 || ||| || ||||| || | | | || || || ||||||||||| ||||| Sbjct 21336 GCGGACGAGAATAGGTCACGAACCCTCGATGAGCCTACGCCGACGAACATCTCCACGAAC 21277 Query 11788 TTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAG 11846 | | | ||| ||||| | ||| || ||| ||| || || || | ||| || || Sbjct 21276 TCAGAACCTGAA-ACTGAGAGGAAAGGGACACTAGCTTCGCCGGCAGTCGCTTTTGCAAG 21218 Query 11847 GAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 | ||||| || ||||| |||| ||| | | || ||| || || || ||| | || || Sbjct 21217 TAAGGTCTTGCCAGTACCGGGTGGACCGGATAAAATGGCACCGCGTGGTATCCTCGCGCC 21158 Query 11907 A--CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCC 11964 |||| ||| |||| || | ||||||||| | ||||| |||| || |||||| Sbjct 21157 TAGCTTCTC--GTACCGCTGGGGTTCCTTGAGGAATTTCACAAACTCCATAATCTCCTCC 21100 Query 11965 TTGGCGGAGTCGATACCCTCAACATCGGTGAA 11996 ||||| ||| || || | || ||| |||| Sbjct 21099 TTGGCCTCGTCCATCCCTGCGACGTCGCTGAA 21068 >seq58313 Length=1260 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 |||||||| || || || ||||| |||||||| || || ||||| | ||| | ||| Sbjct 306 CCTTCATCGCGCGATATCAGCTCGTTACTGAAAGTCAGCCCTGGCATCAATCCGCGTTTT 247 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||| | || ||||| || |||||||||||||| || || || || Sbjct 246 TTCAGCCAGAAGATAGAGCAGAAACTACCCGAAAAGAAGATGCCTTCAACCGCAGCAAAT 187 Query 119634 GCGAATAGACGCTCAGCAAA 119653 || | | |||||| ||||| Sbjct 186 GCCACCAAACGCTCGGCAAA 167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588157315997800