Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_015466.1 Length=62668 Score E Sequences producing significant alignments: (Bits) Value seq111010 116 1e-21 seq109371 107 8e-19 seq107056 82.4 3e-11 >seq111010 Length=53734 Score = 116 bits (128), Expect = 1e-21 Identities = 134/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 3942 CAGGTTGAGGGAACCCAGGAGACACGCA-CCATTCGGCGGAAGCGGTTGCTCCCCACAGG 4000 ||||| || ||| |||||| || ||| |||| ||||||||||||||||| | || | Sbjct 29872 CAGGTCGATGGAGCCCAGGCAGCA-GCAGCCATAGGGCGGAAGCGGTTGCTCGGCGCAAG 29814 Query 4001 GGTTGGTCGCAGCGATCGTCTCGCAATAATAGAGGTTGTTCATCCGGTTGATGGTGTCGA 4060 | |||||||| |||||||||||||| || | |||||||| | ||||||| ||| | Sbjct 29813 GATTGGTCGCCGCGATCGTCTCGCAGTAGTGCAGGTTGTTGTCGCTGTTGATGCGGTCCA 29754 Query 4061 TGAACAAGACGCCAGGGTCTGCGAAGTCCCAGGTGGACCGCATAACCTCTTCCCAAAG 4118 ||| | ||||| || || ||| ||| ||||||| ||||| |||| ||||| || Sbjct 29753 GGAAGAGCACGCCGGGCTCGGCGTGGTCGTAGGTGGAGCGCATGACCTGGTCCCACAG 29696 >seq109371 Length=32687 Score = 107 bits (118), Expect = 8e-19 Identities = 219/323 (68%), Gaps = 2/323 (1%) Strand=Plus/Minus Query 34096 CAAGACCGCCACCCTGTCCGACTGCGGGACCTACCGCTACCGGCTCGGCCGCGA-ATGGG 34154 || |||||||| ||| ||| |||||| ||||||||||| || | |||| | || Sbjct 1891 CATGACCGCCATCCTCTCCCCCTGCGGCCTGTACCGCTACCGCCTTGACCGCAAGGTGAT 1832 Query 34155 GCTCAGGCATCGGCACGACCTATGGCTTCATCGGTGTGAACCCGTCAACAGCCGATGCAG 34214 || || ||| |||| || | || | |||| |||| || ||||| |||||||| || Sbjct 1831 GCACA-GCAGCGGCCCGGCTTACGCCTTCTTCGGCGTCAACCCCAGCACAGCCGACGCCA 1773 Query 34215 ACGAGGAGGACGCCACGACCAGGAAGTGGAGGGGCTTCGTCGAGAGATGGGACGGTGACG 34274 ||| || ||||| ||| | ||||||| ||||||||| | |||| ||| | Sbjct 1772 CCGAAGACGACGCGACGGTGCGCAAGTGGACCGGCTTCGTCAAAGCCTGGGGCGGCCAGC 1713 Query 34275 GCTACGAGGTCGTCAACCTGTTCGCCTACCGAGCGACCGACGTGAAGCAGCTCAAGGCGG 34334 ||| | |||| |||| |||||||||| || || ||||||||| | || | | Sbjct 1712 GCTTCATCGTCGGCAACGTGTTCGCCTATCGCGCCACCGACGTGCGCGACCTGGCCGGAG 1653 Query 34335 CTGATGATCCTTTCGGCCCTGAGAACGGCATCCACATGAGGCGCTTCCTAGAGGAGGTCG 34394 || ||||| |||||| |||| |||| ||||| | | || | |||| || Sbjct 1652 TAGACGATCCGTTCGGCGACGAGATCGGCGAACACATCACCGACATCATCTGCGAGGCCG 1593 Query 34395 ACGTGATCGTTCCGTGCTGGGGC 34417 || | |||| || ||||||||| Sbjct 1592 ACATCCTCGTCCCCTGCTGGGGC 1570 >seq107056 Length=80566 Score = 82.4 bits (90), Expect = 3e-11 Identities = 124/172 (72%), Gaps = 11/172 (6%) Strand=Plus/Plus Query 22101 GTATCCTTGGCCCCAGACGGTTTCGAT--AGCTTCTGCAGCACCGACTTGG----AGCAA 22154 ||| || ||||||||||||| ||||| || | ||| ||||| ||| ||||| Sbjct 68462 GTAGCCACGGCCCCAGACGGTCTCGATGTAGTTCTTGC--CACCGG--TGGCCGAAGCAA 68517 Query 22155 -CTTCCTCCGGGCTTTGCAGACGAAGACGTCAATGATCTTCAGCTCCGGTTCGTCCCGTC 22213 |||| | ||| ||||||| ||| ||||| |||||||||||||| || |||||| | Sbjct 68518 GCTTCTTGCGGAGCTTGCAGATGAAAACGTCGATGATCTTCAGCTCAGGCTCGTCCATAC 68577 Query 22214 CGCCATAAATCTCGGTCAGCGCAGCTTCCTTGGTCAGCGTGCCTCCCTTGCG 22265 ||||||| | | | |||| |||||| ||||| || ||||||||| Sbjct 68578 CGCCATAGAGGTGGTTCAGGAACATTTCCTTTGTCAGGGTCGTTCCCTTGCG 68629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200141188110269