Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq107681 201 1e-46 seq58313 100 3e-16 seq103458 87.8 2e-12 >seq107681 Length=5071 Score = 201 bits (222), Expect = 1e-46 Identities = 611/925 (66%), Gaps = 23/925 (2%) Strand=Plus/Minus Query 18654 ATTCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCC 18713 ||||| || || ||||||| || || | || ||||||||||||||||| ||||| || Sbjct 4524 ATTCAGCACGCCGCTTTTTTGGTAATCTCCTACCCTTTTTTCAAAGAAATTGGTTTTGCC 4465 Query 18714 CTCTAATGATATACAT-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGA 18772 | || ||||| ||| |||||||||||||| || || | | || | ||| Sbjct 4464 TTGTAGGGATAT-CATCTCCATAAAATCAAACGGGTTAGATGCGCCGTACACTTTAGGAT 4406 Query 18773 ATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCAC 18832 | || | ||| || | || || ||||| | ||| ||| | |||||| | | Sbjct 4405 AACCCAGTTCGCCTAACCAACGGTCAGCCACAAACTCAATGTATTGGCTCATCAATTTAG 4346 Query 18833 AATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTA 18892 ||||| |||||||| || || | ||| || |||| |||||||| ||| || | || Sbjct 4345 CGTTCATCCCTATTAACGATACCGGCAATGCGTCGGTAATAAATTCTTTTTCAATCTCTA 4286 Query 18893 CTGCCTCTGATATAATAGATACAACTCTATCT-TCATTAGGAGGGTATAGAAGATGTTTA 18951 | || || | ||||| |||| ||| | | || | | | || Sbjct 4285 CCGCGTCGGTAATAATTTTGGTAACTGCTTCTGTGCTCAGTTTATTCTCCAGCATACCGT 4226 Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 || | || || ||||| || || ||| || || || | ||||| ||| ||| | Sbjct 4225 AA-AGCAGGCAGGCAAATTCGCAGTGTGAACCTTCATCGCGCGATATCAGTTCGTTACTA 4167 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || || || || |||||||| || | ||||||||||||||| |||||| || | | ||| Sbjct 4166 AAGGTCAATCCGGGCATCAGGCCACGTTTTTTTAACCAGAAGATAGAA-CAGAAGCTCCC 4108 Query 19072 -GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATC 19130 |||||||| || ||||| || || ||||| || || | | || || | | || | Sbjct 4107 TGAAAAGAAAATGCCTTCAACAGCCGCAAATGCTACCAAACGCTCGGCAAAGGT-GC--C 4051 Query 19131 ATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190 || || ||||| ||| ||||| || |||||||||| |||||||| || || || Sbjct 4050 GTTGTTG---ATCCAGCGCAGCGCCCACTCTGCCTTCTTTTGCACACATGGAATCGTATC 3994 Query 19191 TATAGAATTAAATA---GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAA 19247 | | | || | ||| | ||| | | ||||||| || | |||||||| Sbjct 3993 AACCGCGTGGAACAAACGATCTTTT---TCAACCGGGTCTTTAATGTAAGTATCTATCAG 3937 Query 19248 TAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCT 19307 || ||| | ||||| || || || || || |||||||| |||||||| || | Sbjct 3936 TAGCGCGTAGGTCTCTGAGTGGATGTTCTCCATCATGATCTGAAAACCGTAAAAGCAACG 3877 Query 19308 TGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAA-TTTTCATTAACTATTC 19366 ||||| | || || || || || || | || | ||| ||||| || || || | Sbjct 3876 GGCTTCGGGTAATTGCACCTCGCT-CATGAAGTTCACAGCAAGGTTTTCGTTCACAATAC 3818 Query 19367 CATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTA 19426 |||| || || |||||||| || | | || ||| |||||||| || | | |||| Sbjct 3817 CATCGCTGGCGGCAAAAAAAGCCAGGATGTGCGAAATGAAATGTTTCTCGCCCG-GGTTC 3759 Query 19427 ATGTATTCC-AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAA 19485 ||| |||| ||| || | || | || | || | |||||| |||||||||| Sbjct 3758 ATGGCTTCCCAATGTTTCAGGTCGTCCGACAGGTCAATTTCTTCGGCTGTCCAAAAGCTG 3699 Query 19486 GCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAAT 19545 || || | |||||||||||| | ||| ||| || | |||| |||||||| ||| ||||| Sbjct 3698 GCTTCCGATTTTTTATACATCTCCCAAATAGCAGGGTATTTTATAGGAAGTATTACAAAG 3639 Query 19546 CTATTTTTATTTTCT-TTAAGAATA 19569 | || ||| || ||| |||| |||| Sbjct 3638 CGATCTTTGTTCTCTCTTAATAATA 3614 >seq58313 Length=1260 Score = 100 bits (110), Expect = 3e-16 Identities = 358/547 (65%), Gaps = 16/547 (3%) Strand=Plus/Minus Query 18654 ATTCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCC 18713 ||||||||| || ||||||| || ||| | || | ||| ||||| || || ||||| || Sbjct 634 ATTCATTACGCCGCTTTTTTGGTAATCGCCCACGCGTTTCTCAAAAAAGTTGGTTTTGCC 575 Query 18714 CTCTAATGATATACAT-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGA 18772 || || ||||| ||| |||||||||||||| |||||| | || |||| ||| Sbjct 574 CTGTAGCGATAT-CATCTCCATAAAATCAAACGGATTTGATGCACCGTATACTTTCGGAT 516 Query 18773 ATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCAC 18832 | || | ||| || ||| || |||||||| | |||||| |||||| | Sbjct 515 AGCCCAGTTCGCCCAGCCATCTGTCGGCTACAAACTCAATATACTGACTCATCAGTTTGG 456 Query 18833 AATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTA 18892 ||||| |||||||| || || || || || | | |||||| | |||||| | || Sbjct 455 CGTTCATACCTATTAACGATACCGGCAGCGCGTCGCTGATAAATTCCTTTTCTATCTCTA 396 Query 18893 CTGCCTCTGATATAA---TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTT 18949 | || ||| |||| | | || | || | | | || | | | | ||| Sbjct 395 CCGCGTCTTTAATAATTTTGGTGACCGC-CTCAGTGC-TCAGCTTGTTTTCCAGCATG-C 339 Query 18950 TAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAG 19009 | ||| || || ||||| || || || || || || | ||||| || ||| Sbjct 338 TGTACAGCAGGCAGGCAAATTCGCAGTGCGAACCTTCATCGCGCGATATCAGCTCGTTAC 279 Query 19010 AAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGAT 19068 || || | || ||||||| ||| | |||||| | |||||| |||| |||| || Sbjct 278 TGAAAGTCAGCCCTGGCATCAATCCGCGTTTTTTCAGCCAGAAGATAG-AGCAGAAACTA 220 Query 19069 CCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCA 19128 || |||||||| || ||||| || || ||||| || || | | || || || | || Sbjct 219 CCCGAAAAGAAGATGCCTTCAACCGCAGCAAATGCCACCAAACGCTCGGCA-AAGTTGC- 162 Query 19129 TCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTC 19188 | || || ||||| ||| ||||| || || ||||| | |||||||| || || Sbjct 161 -CGTTGTT---GATCCAGCGCAGCGCCCATTCGGCTTTCTTCTGCACACATGGTATGGTG 106 Query 19189 TCTATAG 19195 || |||| Sbjct 105 TCGATAG 99 >seq103458 Length=5285 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 48264 TCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGT 48323 ||||| ||||| |||| || ||| || | ||||| | || || |||||||||||| Sbjct 1546 TCTTCCTTGCCGTGATTCTTTCGAAGGTCGATGAAGTCGAATACGTCCGCATGCCATGGT 1487 Query 48324 TCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCA 48383 || | ||| || || | | || |||| ||| |||||||||||||| | ||| | || Sbjct 1486 TCAAGATAAATAGCAAACGCGCCCGGTCTTTTGTTACCTCCTTGATCAACATAACGAGCG 1427 Query 48384 GTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || || ||| | | |||||| |||||||| ||||| || Sbjct 1426 GTTGCGTCATAGGCGCGTAACATCGGGACAATCCCATTCGA 1386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561327461741640