Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_016655.1 Length=51342 Score E Sequences producing significant alignments: (Bits) Value seq107811 187 8e-43 seq15205 145 3e-30 seq67108 113 1e-20 seq13662 93.3 1e-14 >seq107811 Length=6275 Score = 187 bits (206), Expect = 8e-43 Identities = 235/317 (74%), Gaps = 7/317 (2%) Strand=Plus/Minus Query 24834 TGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGTTCAATATCGCGAGC 24893 |||||||| |||||||||||||| ||| | |||||||||||||||||||||||||| Sbjct 4403 TGCCAGCTGTACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCGTTCAATATCGCCTCG 4344 Query 24894 TACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGGTCGGCGAATTCATC 24953 |||||||||||||| || | | ||| | ||| || || | || ||||| ||| || Sbjct 4343 TACGCGCTGCTGACGCACATGATGGCGCAGCAGGCAGGTCTCGACGTGGGCGACTTCGTC 4284 Query 24954 TGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGG-CGACCGAACAACT 25012 ||||||||||| ||| |||||| |||||||||||| | ||||||| ||| |||||| || Sbjct 4283 TGGACCGGCGGTGACTGCCACCTCTATTCGAACCACATGGAGCAGGTCGA-CGAACAGCT 4225 Query 25013 GTCGCGCACGCACACGGGCTAT-CCGTGGCTGGCGCTGAATC---ACCGCGACTCGATCT 25068 ||||| | | | | | | | || ||| | | || | | | ||| || | | Sbjct 4224 CGCGCGCGC-CCCGCTGCCGCTGCCCAAGCTCGTCATCAAGCGCAAGCCGGACACGCTGT 4166 Query 25069 TCGAGTACACCGCCGACGACGTCATATTCCTCGGCTACCGGCCGCACCCGGTCATCAAGG 25128 |||| |||||| ||||||| || || |||||||| | |||| || |||||||| Sbjct 4165 TCGACTACACCTTCGACGACTTCGAGATCGTCGGCTACGCGTCGCATGCGCACATCAAGG 4106 Query 25129 CCCCCGTGGCCGTGTAA 25145 | || |||||||||||| Sbjct 4105 CGCCGGTGGCCGTGTAA 4089 >seq15205 Length=1481 Score = 145 bits (160), Expect = 3e-30 Identities = 225/314 (72%), Gaps = 7/314 (2%) Strand=Plus/Minus Query 24833 CTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGTTCAATATCGCGAG 24892 |||||||||||||||||||||||| ||| | ||||| |||||||| ||||| ||||| || Sbjct 1479 CTGCCAGCTCTACCAGCGCAGCGCCGACATCTTCCTGGGCGTGCCTTTCAACATCGCCAG 1420 Query 24893 CTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGGTCGGCGAATTCAT 24952 ||| ||||||||||| | | || | ||| || ||| | ||||||| ||||| Sbjct 1419 CTATGCGCTGCTGACAATGATGCTGGCCCAGCAGTGCGACCTGCAACTCGGCGACTTCAT 1360 Query 24953 CTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGGCGACCGA-ACAAC 25011 |||||| ||||||||| ||| | || |||||||| ||||||| | | || || | Sbjct 1359 CTGGACGGGCGGCGACTGTCACATCTACGACAACCACGTGGAGCAGGTG-CAGACCCAGC 1301 Query 25012 TGTCGCGCACGCACACG-GGCTATCCGTGGCTGGCGCTGAATCACCG--CGAC-TCGATC 25067 | | ||| || |||| ||| ||| || | | || | ||| || | |||||| Sbjct 1300 TCGCCCGCGAGC-CACGACCCTACCCGACCATGCTGATCAAACGCCGGCCGGCGTCGATC 1242 Query 25068 TTCGAGTACACCGCCGACGACGTCATATTCCTCGGCTACCGGCCGCACCCGGTCATCAAG 25127 ||||| ||| ||| ||| || | ||||||| |||||| |||| |||||| Sbjct 1241 TTCGACTACGAGTACGAGGACTTCGAGCTGAGCGGCTACGAGCCGCATCCGGCCATCAAA 1182 Query 25128 GCCCCCGTGGCCGT 25141 ||||| |||||||| Sbjct 1181 GCCCCGGTGGCCGT 1168 >seq67108 Length=1010 Score = 113 bits (124), Expect = 1e-20 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 24839 GCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGTTCAATATCGCGAGCTACGC 24898 ||| |||||||||||||| ||| | ||||| |||||||| ||||| ||||| ||||| || Sbjct 1 GCTGTACCAGCGCAGCGCCGACATCTTCCTAGGCGTGCCCTTCAACATCGCCAGCTATGC 60 Query 24899 GCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGGTCGGCGAATTCATCTGGAC 24958 | |||| || || | | ||| | ||| | ||| || || || ||||||||||| Sbjct 61 GTTGCTCACGCACATGGTGGCGCAGCAGTGTGACCTGGCCGTGGGTGACTTCATCTGGAC 120 Query 24959 CGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGGCGACCGAACAACTG 25013 |||||||| ||| | || |||||||| || |||| || |||||||||| Sbjct 121 AGGCGGCGATTGCCATATCTACAGCAACCACGTGGACCAGGTGAACGAACAACTG 175 >seq13662 Length=10689 Score = 93.3 bits (102), Expect = 1e-14 Identities = 134/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 24834 TGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGTTCAATATCGCGAGC 24893 ||||||||||| |||||| ||||| || ||||| ||||| || ||||| ||||| ||| Sbjct 10682 TGCCAGCTCTATCAGCGCTCGGCGGATGTGTTCCTGGGCGTTCCCTTCAACATCGCCAGC 10623 Query 24894 TACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGGTCGGCGAATTCATC 24953 || ||||||||||| | | ||| | | || |||||| ||||| ||| | Sbjct 10622 TATGCGCTGCTGACGATGATGATGGCGCAGGCGACGGGGCTGAAGCCGGGCGAGTTCGTG 10563 Query 24954 TGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGGCGACCGAA---CAA 25010 | |||||| ||| || |||||||||||| ||||||||| ||||| || Sbjct 10562 CATTCGCTCGGCGATACCCATCTCTATTCGAACCACTTCGAGCAGG---CCGAATTGCAG 10506 Query 25011 CTGTCGCG 25018 |||||||| Sbjct 10505 CTGTCGCG 10498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163956007868048