Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_018282.1 Length=61167 Score E Sequences producing significant alignments: (Bits) Value seq111010 125 3e-24 seq92742 116 1e-21 seq14176 95.1 5e-15 >seq111010 Length=53734 Score = 125 bits (138), Expect = 3e-24 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 6560 CTACCGCGAAGTGGACGCCCGGGCGCTGTGGGACGCGATCATGCGCGGGACCTGGGATTG 6619 ||||||| | ||| |||| | | |||||||||| | |||||||| |||| || Sbjct 29671 CTACCGCAAGGTGCGCGCCTGTGAGCTGTGGGACCAGGTCATGCGCTCCACCTACGACCA 29730 Query 6620 GGCGGAGCCGGGCGTGCTGTTCATCGACGCGATCAACCGCATGAACAACCTCTGGTACTG 6679 || ||||| |||||||| ||| | ||| |||||| || |||||||| ||||| Sbjct 29731 CGCCGAGCCCGGCGTGCTCTTCCTGGACCGCATCAACAGCGACAACAACCTGCACTACTG 29790 Query 6680 CGAGACCATCGCCGCCACCAACCCCTGCGGTGAGCAACCCCTCCCGCCCTACGGTGCCTG 6739 |||||| ||||| || ||||| || |||| |||||||| || |||||||| || ||| Sbjct 29791 CGAGACGATCGCGGCGACCAATCCTTGCGCCGAGCAACCGCTTCCGCCCTATGGCTGCTG 29850 Query 6740 TCTCCTGGGCTCCTTCAACCTG 6761 |||||||||| || ||||| Sbjct 29851 CTGCCTGGGCTCCATCGACCTG 29872 >seq92742 Length=6105 Score = 116 bits (128), Expect = 1e-21 Identities = 191/270 (71%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 48613 CGCTGTTCGCCTTCCTGACGGAGCTGACGCTGACGATCAACAACAACGTCTCGCCCAACA 48672 || ||||||| | ||| || || || | | ||||||||||||||||||| |||||||||| Sbjct 4644 CGTTGTTCGCTTACCTCACCGAACTCAAGATGACGATCAACAACAACGTGTCGCCCAACA 4585 Query 48673 AGGCGGTCGCTGTCCTCGGGGCCTTCGACGTTTCCGCGGGCACCTTCCAGGTGTCGGGC- 48731 |||| || || || || || ||||||||||| | || || | || | ||||| | | Sbjct 4584 AGGCCGTTGCGGTTCTTGGCGCCTTCGACGTGACGGCAGGTATTTTTGAAGTGTCTGCCG 4525 Query 48732 AACGTGACGGCCTACTTCGCGGACA-TCGCCGCGGTCCAGGCGGTGCGCAACAACTCGGA 48790 || ||| ||| ||||| | ||| ||| || |||||||| || ||||||||| | Sbjct 4524 AAGCTGA-GGCTTACTT-TAGCACAGTCGAAGCTGTCCAGGCCGTTCGCAACAACGCCAG 4467 Query 48791 CGTGACGCTGGACTTCGCCTTGGTGAAGAACAACGCCGGTCTGGTGTGGGACATCCCGCT 48850 || || | | ||| | || ||||||||| ||| | || |||||| || || Sbjct 4466 CGGTCAAATGTTCATGGCCGTTGTCAAGAACAACTATGGTTTCGTTATGGACATGCCTCT 4407 Query 48851 GCTCGCCCTGGGCGACGGTCGCCTGAACGT 48880 |||| || ||| ||| || ||||||| Sbjct 4406 TGTCGCTCTCGGCAACGCACGTTTGAACGT 4377 >seq14176 Length=1367 Score = 95.1 bits (104), Expect = 5e-15 Identities = 134/188 (71%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 5082 CTCGCCCTGGGCGATCCCGGACAGCTCCCGCCCGT---GGGCGGCACCCCCTTCTTCAAG 5138 |||| || |||||||||| ||||| ||||| || ||| ||| | |||| | || Sbjct 800 CTCGTGCTCGGCGATCCCGCCCAGCTGCCGCCGGTCAAGGGTGGCGGCTTCTTCACCGAG 741 Query 5139 AACAAGCCCGACATCCTGCTCACGGAGATTCACCGCCAGGCCCAGGACAACCCGATCATC 5198 | |||| ||| | |||| ||| || | || ||||||||| ||||| |||||| || Sbjct 740 GCCGAGCCGGACGTGATGCTGACGCAGGTGCATCGCCAGGCCGCCGACAATCCGATCGTC 681 Query 5199 TGGATGTCCAAGGAGGTCCGCGAGGGCCGCGTGCTCCGCCCCGGCGACTACGGTGCCAGC 5258 | ||||| | ||| ||||||||||||||| ||| | |||| ||| || | ||| Sbjct 680 CGCATGTCGATGGAAATCCGCGAGGGCCGCGCGCTTGACTACGGCACCTATGGCGAGAGC 621 Query 5259 CGCGTGAT 5266 ||||| || Sbjct 620 CGCGTCAT 613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195354490974698