Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_018283.1 Length=58065 Score E Sequences producing significant alignments: (Bits) Value seq107962 196 2e-45 seq18004 86.0 2e-12 >seq107962 Length=16137 Score = 196 bits (216), Expect = 2e-45 Identities = 670/1040 (64%), Gaps = 51/1040 (5%) Strand=Plus/Minus Query 17553 GGCTACACCGCGCAAATCCGACTGAAGCGGGACGGCAAGGTGATCTTCACCGAGGCGCAA 17612 |||||||| ||| ||||| | ||||| || ||| ||||| | | | |||||| | Sbjct 10555 GGCTACACGGCGTCGATCCGGGTCAAGCGCGAGGGCCAGGTGGTGCACTCGGAGGCGAAG 10496 Query 17613 ACATTCGATCGCAGATC-GGCCGCGAGCGCGTGGATGAAGAAGCGCGAAGGTGAACTGGC 17671 || ||||| ||| || | |||||| | |||||| |||||| | || ||||| Sbjct 10495 ACGTTCGACCGC-GAGCAGGCCGCCCGGATCTGGATGGGTCGGCGCGAGGCCGAGCTGGC 10437 Query 17672 GAAACCGGGGGCGCTCGAACGGCCGAAGGGTGAAGACCCAAAACTGCGCGACGTGATCGA 17731 | || || || | || |||||| ||||| ||||||||||| ||||| Sbjct 10436 CGAGCCAGGCGCCTTAGA------GAAGGGGCCGGACCCGCTGCTGCGCGACGTCATCGA 10383 Query 17732 CCAGTACTTCGCCGAGTCCGAGAAGGAGCATGGTCGCACGAAGGCTCAGGTGCTACGGAC 17791 ||||||| | ||| ||||| ||| || || ||| | |||||||| || Sbjct 10382 CCAGTACAACCAAGAGAAGCAGAAGCTGCACGGCAAGACCAAGACGCAGGTGCTCAACAC 10323 Query 17792 GATCAAGACCCACGACATCGCCGACAAGCGCTGCTCGCAGATCACGAGCACGGTCATCGT 17851 |||||| || ||| | | | | ||||||||||| |||| ||| | | | || Sbjct 10322 CATCAAGGCCTCCGAGCTGGGCAAGCAGCGCTGCTCGGCGATCGGCAGCCCCGAGCTGGT 10263 Query 17852 CGCCTTCCTTCAGGAACTCGACGTGACCCCGGCCACGCGCAGTAGCTACCTGTCGTTCCT 17911 | ||| |||| || | ||| ||| |||||| | |||| ||||| ||| Sbjct 10262 CAAGTTCGCCCAGGGGCTGCAGGTGCTGCCGCAGACGCGCCTGAACTACATGTCGCACCT 10203 Query 17912 CGGCTCAATCTTCACGGTCGCGCGGCCGATGTGGGGCTACCCGCTCGACGATCAGCAGAT 17971 |||||| |||||||| |||||||||||| ||||||||||| ||||| | | || Sbjct 10202 CGGCTCGATCTTCACCGTCGCGCGGCCGGCCTGGGGCTACCCCCTCGATACCCGGGCCAT 10143 Query 17972 GGACGACGCGTGGTTGGTCGCCCGCAAGATGGGGATCATCGGCAAGAGCCAGGAACGCGA 18031 | |||||| | |||| ||| |||| | | | |||| | | |||||||| Sbjct 10142 GTCAGACGCGCTGGTGGTGCTGAAGAAGCTGGGCCTGGTGGCCAAGCCCAACGAACGCGA 10083 Query 18032 TCGGCGTCCGACCTTCGAAGAACTCGACAAGCTGATGACGCATTTCCAGG--AGCGCAAC 18089 || | || ||| | | || || ||| ||||| || |||| | | ||| | || | Sbjct 10082 GCGAAGGCCCACCCTGGCCGAGCTGGACCAGCTGCTGGCGCACTACGAGGTCACCGAGGC 10023 Query 18090 CACCGCCGCCCGTCGTCGAACCCGATGCACTACGTCATCGGCTTTGCCATCTTCTCGACG 18149 || || |||| | | ||||||| | | ||| ||||| |||||| || Sbjct 10022 CA-AGCACCCCGGC----ATTCCGATGCGCATGCTGATCCTGTTTGCGATCTTCAGCACC 9968 Query 18150 CGGCGCATGGACGAGATCGCGCGCATCG---CGTGGGACGACTACGACAAGGAAGGCAAG 18206 ||||| ||| |||||| ||| || || | | |||| |||| | | |||| Sbjct 9967 AGGCGCCAGGAGGAGATC---TGCAACGTGACGGGCGCCGACCTCGACCGG---GCCAAG 9914 Query 18207 CG--AG-TCTTGGTCCGCGATATGAAGAACCCCGGCGAGAAGGTCGGGAACGACGTGTGG 18263 || || || |||| ||||| |||||||| || ||||| |||||||| ||||||||| || Sbjct 9913 CGGCAGCTCATGGTGCGCGACATGAAGAATCCAGGCGACAAGGTCGGCAACGACGTGCGG 9854 Query 18264 TGCGATCTGGTGCCCGAGGCTATCGCGATCATCGAGGCCATGCCGCGTGTCGCCGACCAA 18323 | ||| ||||||||| | | | ||||| ||| |||| | | || | Sbjct 9853 ACCACGCTGACGCCCGAGGCGCTGCAGCTGATCGACGCCCAGCCGGAAACCCAGGGCCGA 9794 Query 18324 ATCTTCCCCTACAGCCCCGACGCGATGGGCGCGGCCTTCACGCGGGCGTGCTACCTGCTC 18383 ||||| || |||| | | || | | || | ||| ||||||| ||| | | ||| Sbjct 9793 ATCTTTCCGTACAACGAGAAGTCGGTCAGTACGTCGTTCTCGCGGGCCTGCAAGATCCTC 9734 Query 18384 GGCATCAACACGGAAGAGATGCCGGAAGAAAAGCGCCTGCACTTCCACGATCTGCGCCAT 18443 |||||| |||| ||||||||||||||| |||| || Sbjct 9733 GGCATC-----------GATG-------------ACCTGCACTTCCACGACTTGCGGCAC 9698 Query 18444 GACGGCGTATCGCGTCTGTTCGAAATGGGTTGGAACATCCCGCACGTCGCGGCCGTGTCC 18503 || ||| | || |||||||| |||| |||| |||||| || | ||| | ||||| Sbjct 9697 GAAGGCATCAGCCGGCTGTTCGAGCTGGGCTGGACCATCCCCCAGGCCGCCACGGTGTCA 9638 Query 18504 GGGCACCGAAGCTGGAAAAGCCTTCAGCGCTACACGCACCTACGGCAGAGCGGCAACAAG 18563 | |||||| |||||| | | |||||||| ||||| | ||||| || |||| Sbjct 9637 GCGCACCGGAGCTGGCAGTCGTTGAAGCGCTACGCGCACATCGAGCAGACTGGGGACAAA 9578 Query 18564 TACGAAGGCTGGAAATGGCT 18583 |||| |||||| |||||| Sbjct 9577 TACGCGGGCTGGCCATGGCT 9558 >seq18004 Length=2000 Score = 86.0 bits (94), Expect = 2e-12 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 14265 ATGCCAGAAACAACCGTGGACGAAAATCACCTTCTTGCGCGATGCGAACACAAGGTCGGG 14324 |||||||||||| ||||||||||| |||||||||||||| | |||||| ||||| || Sbjct 46 ATGCCAGAAACACCCGTGGACGAAGATCACCTTCTTGCGACCGGGGAACACCAGGTCCGG 105 Query 14325 TCGGCCAGGCAAGTTTCG-GCCGTGCAGCCTGAAACGGTATCCAAG 14369 || || ||| || |||| ||||||||| | | | || || || || Sbjct 106 CCGCCCCGGC-AGCTTCGCGCCGTGCAGGCGGTAGCGATAGCCCAG 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185441198903774