Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_020489.1 Length=40489 Score E Sequences producing significant alignments: (Bits) Value seq109371 154 4e-33 seq106242 118 3e-22 seq109454 91.5 4e-14 >seq109371 Length=32687 Score = 154 bits (170), Expect = 4e-33 Identities = 448/679 (66%), Gaps = 42/679 (6%) Strand=Plus/Minus Query 26864 AGTCGATGCACTCGGCGGCAGCGCGCCACGGCTTGAGCCTGCCCTTGCGGACCGCCGGGC 26923 ||| ||||||||||||||| | ||| | ||| | | | || | | |||||| || Sbjct 19873 AGTTGATGCACTCGGCGGCGGTGCGGTAAGGCAGCAACTTCCCAGCGAGCACCGCCCGGT 19814 Query 26924 TTTTCGGATCTCCATGCGTCGGTGCAGGCCAGACGATCCGGCGGCCATCGCAGCGCGCCA 26983 | | || || |||||||| | ||||||||||||| | |||| || | |||||| | Sbjct 19813 TGCTGGGCTCGGCATGCGTCTGCTCAGGCCAGACGATGGGCAGGCCGTCACGGCGCGCGA 19754 Query 26984 CCAGAAACAGGCGCTTGCGGATCGTAGGGGCGCCGAAGTCGCAGGCGCGCAGCTCGCGCC 27043 ||| |||||||||||||| || || || || ||| ||||| || || |||| ||| Sbjct 19753 TCAGGAACAGGCGCTTGCGAATGGTCGGCGCACCGTCATCGCACGCCCGGCGCTCCTGCC 19694 Query 27044 ATTCGACGCGATAGCCGCGCTCGCGCAGCTGGCGCACCCACAGCTCAAATGTTTGGCCGG 27103 | || || |||||| || | |||||||||||||| | || || || ||| Sbjct 19693 AGTCCACCGTGTAGCCGTGCGCACGCAGCTGGCGCACGAAGGACTGGAAGGTCACGCC-- 19636 Query 27104 CGAATTCTT-TGATC-GGCTGGCCGTCC---TCGCCC------------------ACCGG 27140 | ||||| | || ||| | | || |||||| | ||| Sbjct 19635 CCGCTTCTTCGGGTCAGGCATCCAGACCAGTTCGCCCTCACGCTCCACCTGCATGAGCGG 19576 Query 27141 CCCCCAGGTCGTGAACTCCTCGACGTTTTCGAGAAGGATCACGTCAGGGCGCTGCGCGCG 27200 |||||| | |||||||||||||||||| || | || ||| |||| || Sbjct 19575 GCCCCAGTCCTGGAACTCCTCGACGTTTTCAAGCATGAGCAC------GCGCGGC---TT 19525 Query 27201 GGGCAGATCCGCCCAGCGGATCACCACCCACGCGAGATCGCGGATATTGCGGTCGCGGAC 27260 || ||| || ||||||| || ||||||| || || ||||||| ||| |||| | Sbjct 19524 GGTCAGCGCCACCCAGCGCATGCCCACCCAGGCCAGGCCGCGGAT-GTGC-TTCGCCACC 19467 Query 27261 -GCTTG-CGCCCTTCGCCTTCGAGAAATGCTTGCAGTCCGGCGAGGCCCATACCATGCCG 27318 || || | ||||| ||||| ||| ||||||||||| ||||| ||| |||| || Sbjct 19466 GGCGTGCCACCCTTGGCCTTGCTGAAGTGCTTGCAGTCGGGCGACAGCCACACCAGCGCG 19407 Query 27319 ACCTTGCGGCCCGCGGTCACGGTGGCCGGGTCAACGTCCCAGATGTTGCTGTC-GAGATG 27377 || || | | ||||| || ||||| |||||||||| || | || || Sbjct 19406 ACAGGCTGGTTCCCCGTCACCTTGATTGGGTCCACGTCCCAGA-CCGACTCACACAGGTG 19348 Query 27378 CAATGTCTCGGGGTGGTTGGCTGCATGCAGCGCCAGCGCC-GCGGCAGAGTGGTTGATGG 27436 | || || ||||| ||||||| |||||| ||| |||| ||||||||||| Sbjct 19347 CCGCGTGAGCGGATGGTTCAAGGCATGCATCGCCAGTGCCTGCGG-GTCGTGGTTGATGG 19289 Query 27437 CGACATCGGGCGAGCGGCCAAGGGCCTGCTCGATGCCGGTCGAGGCGCCGCCGCCTCCGG 27496 | || || || ||| || | |||||||| | ||| ||| | ||| ||||| |||| Sbjct 19288 CCACGTCCACCGGGCGCCCGAAAGCCTGCTCCAGGCCCTCCGAAGTGCCACCGCCGCCGG 19229 Query 27497 CAAAACAGTCGATGATGAG 27515 | || |||||||||||| Sbjct 19228 CGAAGTTGTCGATGATGAG 19210 Score = 100 bits (110), Expect = 7e-17 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 24126 GAGCCACTCACCCCACTGTTTGTGGTGGAACGCCACGCCAGCGCTTACGCACTGGTCGCG 24185 || |||||| |||||||| ||| ||| |||||||||| || ||||||||||||| Sbjct 5503 GATCCACTCGCCCCACTGCTTGAAGTGAAACGCCACGCTGGCCGCCGCGCACTGGTCGCG 5562 Query 24186 CAGGCTGCGGACCCAATCCGGGTGCATGGGCCGGGCGCGCGGGCCGCTCTCGCCGCCGAC 24245 |||| |||| |||| |||||||| || || |||| || ||||||||||| ||||| Sbjct 5563 CAGGGCGCGGGCCCAGCTGGGGTGCATCGGACGCGCGCCAGGCCCGCTCTCGCCTCCGAC 5622 Query 24246 GAT 24248 ||| Sbjct 5623 GAT 5625 >seq106242 Length=2342 Score = 118 bits (130), Expect = 3e-22 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 25854 GAAGCCTTGCGCGCGGAACAGCTCGCGCGGGGTCAGCATCCGCATGCCGATATCGACCAC 25913 ||| || ||||| ||| |||||||||| |||||||||||||||||||| || || | Sbjct 2009 GAAACCCTGCGCATTGAAGCGCTCGCGCGGCGTCAGCATCCGCATGCCGATGTCCACGAT 1950 Query 25914 GACGAATTTGGCGCCGTCGATCTGCAACGTGACGAATTCGCCGCCATCCCATGCACCATG 25973 |||||| | | || ||||| | | ||| |||||||||| ||||||| || || Sbjct 1949 GACGAACGTCACACCTTCGATATCAAGCGTCACGAATTCGCGCTCATCCCAAAAGCCGTG 1890 Query 25974 CGCGCGCAGAAACTCTGCCACCTGCCGGGCCCGGGCGTGATGCTCTGGTCCGAAGGGAGG 26033 |||||||| || | || ||||| ||||| ||| ||| |||||| ||| ||| || || Sbjct 1889 CGCGCGCATGAAAGCGGCGACCTGACGGGCGCGGTCGTAATGCTCGGGTGTGAACGGCGG 1830 >seq109454 Length=55839 Score = 91.5 bits (100), Expect = 4e-14 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 24129 CCACTCACCCCACTGTTTGTGGTGGAACGCCACGCCAGCGCTTACGCACTGGTCGCGCAG 24188 |||||| ||||| || ||| |||||| |||||| ||| |||||||||||||||| Sbjct 48014 CCACTCGCCCCATTGCTTGAACAGGAACGGCACGCCGGCGGCCTCGCACTGGTCGCGCAG 47955 Query 24189 GCTGCGGACCCAATCCGGGTGCATGGGCCGGGCGCGCGGGCCGCTCTCGCCGCCGACGAT 24248 | ||| |||| | ||| |||| ||||| ||| | ||||||| ||||||||| ||| Sbjct 47954 GTCTCGGGCCCAGGCGGGGAGCATCGGCCGCGCGTGGTGGCCGCTTTCGCCGCCGCAGAT 47895 Query 24249 CAC 24251 ||| Sbjct 47894 CAC 47892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129272268717262