Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_020840.1 Length=38987 Score E Sequences producing significant alignments: (Bits) Value seq109454 118 3e-22 seq81106 105 2e-18 seq109371 95.1 3e-15 seq36499 93.3 1e-14 >seq109454 Length=55839 Score = 118 bits (130), Expect = 3e-22 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 11917 ACTGGGTCATCTGTGGTGGCGAGAGCGGCGATGGCGCCCGGCCGATGCACCCAGAGTGGG 11976 ||||||| ||||| || ||||| |||||| | ||| |||||||||| ||| | |||| Sbjct 47887 ACTGGGTGATCTGCGGCGGCGAAAGCGGCCACCACGCGCGGCCGATGCTCCCCGCCTGGG 47946 Query 11977 CCAGGCAGGTGCGTGACCAGTGCGCGGCCGCTGATGTGCCGTTCCTGTTTAAGCAATGGG 12036 || | | |||| |||||||||| |||||| | |||||||||||||| |||||||||| Sbjct 47947 CCCGAGACCTGCGCGACCAGTGCGAGGCCGCCGGCGTGCCGTTCCTGTTCAAGCAATGGG 48006 Query 12037 GGGACTGGCTGCCTG 12051 | || ||| ||||| Sbjct 48007 GCGAGTGGACGCCTG 48021 >seq81106 Length=13242 Score = 105 bits (116), Expect = 2e-18 Identities = 103/129 (80%), Gaps = 8/129 (6%) Strand=Plus/Plus Query 11916 GACTGGGTCATCTGTGGTGGCGAGAGCGG--CGATGGCGCCCGGCCGATGCACCCAGAGT 11973 ||||||||||||||||| ||||||||||| | | |||| || ||||||||||| | | Sbjct 8761 GACTGGGTCATCTGTGGCGGCGAGAGCGGCCCCAAGGCG--CGTCCGATGCACCCGGCAT 8818 Query 11974 GGGCC--AGGCAGGTGCGTGACCAGTGCGCGGCCGCTGATGTGCCGTTCCTGTTTAAGCA 12031 ||||| |||| | || || |||||||||||||| | ||||||||| |||| ||||| Sbjct 8819 GGGCCCGAGGC--CTCCGCGATCAGTGCGCGGCCGCCAAGGTGCCGTTCTTGTTCAAGCA 8876 Query 12032 ATGGGGGGA 12040 ||||| || Sbjct 8877 GTGGGGTGA 8885 >seq109371 Length=32687 Score = 95.1 bits (104), Expect = 3e-15 Identities = 102/130 (78%), Gaps = 4/130 (3%) Strand=Plus/Minus Query 11758 GGCA-CGGCTGGGACCA-CGTCTGGCTGGGCATCACCGTAGTGAACCAGGATGAAGCTGA 11815 |||| || || || ||| ||| ||| | ||| ||| || || ||||||| ||||| || Sbjct 5869 GGCAGCGCCTTGGCCCAACGTTTGGATCGGCGCCACAGTCGTCAACCAGGCAGAAGCCGA 5810 Query 11816 CCGCGACATCCCTAAGCTGGAGGCCACACCGGC-CGCGGTGCGCTTCCTGAGCGTGGAGC 11874 |||||||||||| |||||| |||| | ||||| ||| ||||| ||||||||| |||||| Sbjct 5809 CCGCGACATCCCGAAGCTGCTGGCCGCGCCGGCGCGC-GTGCGGTTCCTGAGCATGGAGC 5751 Query 11875 CCATGCTGGG 11884 | || |||| Sbjct 5750 CGCTGATGGG 5741 >seq36499 Length=515 Score = 93.3 bits (102), Expect = 1e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 11916 GACTGGGTCATCTGTGGTGGCGAGAGCGGCGATGGCGCCCGGCCGATGCACCCAGAGTGG 11975 || |||||| || || ||||| |||||||||||| ||||||||||||||||||||| Sbjct 267 GATTGGGTCGTCGTCGGGGGCGAATCCGGCGATGGCGCACGGCCGATGCACCCAGAGTGG 326 Query 11976 GCCAGGCAGGTGCGTGACCAGTGCGCGGCCGCTGATGTGCCGTTCCTGTTTAAGCAATGG 12035 || | | || || || |||||||| || | ||||| || || || ||||||||| Sbjct 327 GCTCGATCACTCCGCGATCAATGCGCGGCTGCCGGCGTGCCATTTCTTTTCAAGCAATGG 386 Query 12036 GGGGACTGG 12044 || || ||| Sbjct 387 GGCGAGTGG 395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124472215625538