Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq58313 104 3e-17 seq107681 100 4e-16 >seq58313 Length=1260 Score = 104 bits (114), Expect = 3e-17 Identities = 223/334 (67%), Gaps = 8/334 (2%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| || ||| |||||||||| | ||||| | |||||||| || || | | Sbjct 327 CAGGCAAATTCGCAGTGCGAACCTTCATCGCGCGATATCAGCTCGTTACTGAAAGTCAGC 268 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | || | |||||| ||||| || || || |||||||| |||||||| Sbjct 267 CCTGGCATCAATCCGCGTTTTTTCAGCCAGAAGATAGAGCAGAAACTACCCGAAAAGAAG 208 Query 18278 ATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG 18336 || || ||||| ||| || || || | || | || ||||| || || ||| Sbjct 207 ATGCCTTCAACCGCA-GCAAATGCCACCAAACGCTCGGCAAAGTTGCCGTTGTTG----- 154 Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 ||||| | |||||||| ||| | ||| ||||| | || ||||| | Sbjct 153 -ATCCAGCGCAGCGCCCATTCGGCTTTCTTCTGCACACATGGTATGGTGTCGATAGCGTG 95 Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456 ||||| ||| ||||| | ||||||| ||||||||||| ||||||| || | Sbjct 94 GAACAACCGATCCTTTTCGGCCGGGTCTTTTACGTAAGTGTCGATCAACAAAGCGTAGGT 35 Query 18457 TTCAGAATGTATGCTTTCCATAGCTATCTGAAAA 18490 ||| || || || | ||||| ||||| ||| Sbjct 34 TTCCGAGTGGATATTCTCCATCATGATCTGGAAA 1 >seq107681 Length=5071 Score = 100 bits (110), Expect = 4e-16 Identities = 243/371 (65%), Gaps = 6/371 (2%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| || |||| |||||||||| | ||||| | |||||||||||| || || Sbjct 4217 CAGGCAAATTCGCAGTGTGAACCTTCATCGCGCGATATCAGTTCGTTACTAAAGGTCAAT 4158 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 |||||||| | || | |||||||| ||| || || || ||| || | |||||||| Sbjct 4157 CCGGGCATCAGGCCACGTTTTTTTAACCAGAAGATAGAACAGAAGCTCCCTGAAAAGAAA 4098 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT 18337 || || ||||| ||| || |||| || | || ||||| || || ||| Sbjct 4097 ATGCCTTCAACAGCCGCAAATGCTACCAAACGCTCGGCAAAGGTGCCGTTGTTG------ 4044 Query 18338 ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTA 18397 ||||| | ||||| ||| | | | ||| || || | || | || | Sbjct 4043 ATCCAGCGCAGCGCCCACTCTGCCTTCTTTTGCACACATGGAATCGTATCAACCGCGTGG 3984 Query 18398 AACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATT 18457 |||||| ||||||||| | ||||| || ||||| || || | | | || | Sbjct 3983 AACAAACGATCTTTTTCAACCGGGTCTTTAATGTAAGTATCTATCAGTAGCGCGTAGGTC 3924 Query 18458 TCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATAT 18517 || || || ||| | ||||| |||||||||| ||||| | | || ||||| || Sbjct 3923 TCTGAGTGGATGTTCTCCATCATGATCTGAAAACCGTAAAAGCAACGGGCTTCGGGTAAT 3864 Query 18518 TGAATCTCGCT 18528 || | |||||| Sbjct 3863 TGCACCTCGCT 3853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730854688771600