Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq108213 170 6e-38 seq37734 150 6e-32 seq56696 145 2e-30 seq108967 120 1e-22 >seq108213 Length=2622 Score = 170 bits (188), Expect = 6e-38 Identities = 271/381 (71%), Gaps = 16/381 (4%) Strand=Plus/Minus Query 40119 TCGAGCACGCGAGCCG-CGTCCTTCATCGCG---TTGCGCGCCTTGATCCGTCCGTACGT 40174 ||||||||||| |||| |||| |||||| ||| |||| ||| ||| | || Sbjct 1850 TCGAGCACGCG-GCCGACGTCGCGGATCGCGCCCTTGGCCGCC---ATCGTACCGAAGGT 1795 Query 40175 CGCGATCTGCGCGACCTTGTCGGCCCCGTACT--TCCGGGTGACGTACTGGATGACCTCG 40232 |||||||||| |||| ||| |||||| ||| | |||| |||||| || | Sbjct 1794 GGCGATCTGCGAGACCGCGTCCTTGCCGTACAAATCCT--TCACGTGCTGGATCACGCGG 1737 Query 40233 CCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGT 40290 | || | || | || |||||||||||||| |||||||| |||||||| ||||| | Sbjct 1736 TCGCGCCCTTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATCGACACGCGTTCGGGAT 1679 Query 40291 TCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGA 40350 | |||||||||||||| | || || || ||||| ||||||||||||||| || Sbjct 1678 TGAGGAAGCGCTCGAACAGCAGATTGTACTGGAGCGGATCGAGGTCGGTGATCAGCAGCG 1619 Query 40351 CGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCT 40410 |||||| |||||||||||||| | || || || || || || ||| || || |||| Sbjct 1618 AGTAGGCCACCAGCGAACCGGCGCCCGAACCACGGCCCGGCCCCACCGGCACACCATTCT 1559 Query 40411 CCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGA 40470 |||| ||||| |||||| || || |||| |||||||| ||||| ||| | Sbjct 1558 CCTTGGCCCACTTGATGAATTCGGCCACGATCAGGAAGTAGCCGGGGAATTTCATATTAC 1499 Query 40471 TGATCATGTCGATCTCGTACT 40491 |||| ||||| ||||| ||| Sbjct 1498 AGATCGTGTCGGTCTCGAACT 1478 >seq37734 Length=186 Score = 150 bits (166), Expect = 6e-32 Identities = 143/183 (78%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 40268 GGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGG 40327 |||||||||||| ||||| ||||||||||||||||| || | || || |||||| Sbjct 1 GGGCATGGACACCCGCTCCGGGTTCAGGAAGCGCTCAAACAGCAGGTTGTAGCGCAGCGG 60 Query 40328 GTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCC 40387 ||| ||||| |||||| || | |||||||||||||| ||||| | |||||||| || Sbjct 61 GTCCAGGTCCGTGATCAGCAGCGCATAGGCGACCAGCGAGCCGGCACCGGAGCCCCGGCC 120 Query 40388 AGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAA 40447 |||||||| | ||||| |||| ||||||||||||||||||| |||| ||||| Sbjct 121 CGGGCCGACAGGGCAGCCGTTTGCCTTGGCCCAGCGGATGAAGTCCGACACGATCAGGAA 180 Query 40448 GTA 40450 ||| Sbjct 181 GTA 183 >seq56696 Length=1533 Score = 145 bits (160), Expect = 2e-30 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 40268 GGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGG 40327 |||||||||||| ||||| ||||||||||| || ||||| | | | || || |||||| Sbjct 1533 GGGCATGGACACCCGCTCCGGGTTCAGGAACCGTTCGAACAGCAACTTGTACTGCAGCGG 1474 Query 40328 GTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCC 40387 ||| |||||||| ||| || | || || |||||||||||||| |||||||||| || Sbjct 1473 GTCCAGGTCGGTAATCTTCAGCGCATAAGCCACCAGCGAACCGGCACCAGAGCCCCGGCC 1414 Query 40388 AGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAA 40447 || || ||| | || || ||| |||||| |||||||||| | |||| | ||| Sbjct 1413 TGGCCCCACCGGGCAGCCATTGAGCTTGGCCCAGTTGATGAAGTCCCCCACGATCAAGAA 1354 Query 40448 GTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCT 40500 ||| |||||| ||||||| | ||| || ||||||| | | ||| ||| Sbjct 1353 GTAGCCCGGGAAGCCCATCTTCAGGATGGTGGTGATCTCGAATTCCAGCCGCT 1301 >seq108967 Length=4619 Score = 120 bits (132), Expect = 1e-22 Identities = 229/331 (69%), Gaps = 10/331 (3%) Strand=Plus/Plus Query 40125 ACGCGAGCCG-CGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTG 40183 ||||| |||| |||| || | || |||||||| || | |||| | || |||||| Sbjct 4293 ACGCG-GCCGACGTCGCGCAGCACGGCGCGCGCCTGGAGCGTTCCGAAAGTAATGATCTG 4351 Query 40184 CGCGACCTTGTCGGCCCCGTACTT--CCGGGTGACGTACTGGATGACCTCGCCACGACG- 40240 ||| |||| ||| || || || || || ||||| | || |||||| | || || Sbjct 4352 CGCAACCTGATCGCGGCCATATTTTTCCTGG--ACGTAGCGAATAACCTCGTCGCGCCGG 4409 Query 40241 -CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGC 40299 || | || ||| ||||| |||| ||| ||||| ||||||||||| ||||||||||||| Sbjct 4410 TCCTGGCA--GAAATCGATATCGAAATCCGGCATCGACACGCGCTCCGGGTTCAGGAAGC 4467 Query 40300 GCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGA 40359 ||||||| | ||| | | ||||| || || |||||||| || | |||| Sbjct 4468 GCTCGAACAGAAGCGCAAACCGGAGCGGATCCAGATCGGTGATGGTCAGCGCCCAGGCCG 4527 Query 40360 CCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCC 40419 | | ||| || || | || || || || || || || | ||| | ||||||||| Sbjct 4528 CGACCGAGCCCGCACCCGACCCACGTCCCGGTCCAACAGGAATGCCGCGCGCCTTCGCCC 4587 Query 40420 AGCGGATGAAGTCCGCGACGACGAGGAAGTA 40450 | ||||||||||| |||| |||||||| Sbjct 4588 ATTTGATGAAGTCCGACACGATCAGGAAGTA 4618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163109127662118