Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq108438 86.0 1e-11 seq84569 86.0 1e-11 seq13940 84.2 4e-11 >seq108438 Length=3402 Score = 86.0 bits (94), Expect = 1e-11 Identities = 127/178 (71%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 44625 TCATCTTCAAACACCTAGCCGTGATGCCTGATGTACACTGGGGAATGGGCGCGACCATTG 44684 || ||||||| ||| | |||| |||||| || || || | || || ||||||||| | | Sbjct 2999 TCGTCTTCAAGCACATCGCCGCGATGCCGGACGTGCATTACGGCATCGGCGCGACCGTCG 3058 Query 44685 GTTCGGTTATTGCGACTA--AAGGTGCGATTATTCCTGCCGCAGTGGGTGTTGATATTGG 44742 | ||||| || | || | |||| | || || || || || |||||||| || || || Sbjct 3059 GCTCGGTCATCCCCACCATCAAGG--CCATCATCCCGGCGGCCGTGGGTGTGGACATCGG 3116 Query 44743 TTGTGGGATGATTGCCCAACAAACCTCGCTGGTTGCTGCTGACCTGCCCGATAACCTC 44800 || || ||||| ||| | ||| ||||| || | ||||||||||| |||||| Sbjct 3117 CTGCGGCATGATGGCCTGCAAGACCACGCTGACCGCCGAGGACCTGCCCGACAACCTC 3174 >seq84569 Length=598 Score = 86.0 bits (94), Expect = 1e-11 Identities = 326/499 (65%), Gaps = 26/499 (5%) Strand=Plus/Plus Query 45179 GACCAAGATCTGGCGTATCTCCCAGAAGGCTCTCAGTATTACGATGACTACTTGCAAGCG 45238 ||||| || ||||| || | |||||| | ||||| | | ||||||| ||| | Sbjct 110 GACCAGGACCTGGCCTACTTTGAAGAAGGTGCCCAGTACTTTGGTGACTACGTGCGTGGC 169 Query 45239 GTGCAATGGGCACAAGACTTTGCAGCGC-TCAATCGTGCGGTGATGCTG-AGCGCGACAC 45296 ||| ||||| ||| | ||||| |||| | || || | ||||||| || || || | Sbjct 170 GTGGGTTGGGCGCAAAAGTTTGC-GCGCCTGAACCGCGAGGTGATGATGCAGGCCGTGAT 228 Query 45297 TGAAGGCATTGCACAGTACCGTGGCTAAGCCATTCACTGAAA-GCACCATT--GCGGTTA 45353 || | || ||| || ||| | || ||||| ||| || | ||||| ||||| | Sbjct 229 TGGCG-CACTGCGCAAGACCATAGCCAAGCCGTTC---GAGACGCACCTGGAAGCGGTGA 284 Query 45354 ACTGTCATCACAACTATGTTGCCATGGAAAACCATTTTGATACCA--ATGTCCTGGTCAC 45411 |||| || ||||||||||| | ||||| || |||| ||| | || | || || Sbjct 285 ACTGCCACCACAACTATGTGCAAAAGGAAACGCACTTTG--GCCAAGAGGTATTTGTGAC 342 Query 45412 CCGTAAAGGTGCAGTGCGGGC----GCGTATAGGTGATCTAGCGATTATCCCGGGTAGCA 45467 ||| || || |||||| | || ||| ||||| || | ||||||||| || |||| Sbjct 343 CCGCAAGGGCGCAGTGAGCGCCAAGGCG----GGTGAGCTGGGGATTATCCCCGGCAGCA 398 Query 45468 TGGGCGCGAAGTCGTTTATTGTCGAAGGTCTGGGTAACCAGGAAAGCTTCTGTTCATGTT 45527 |||| || ||| || || || ||| ||| |||| ||| |||||| || | Sbjct 399 TGGGAGCCAAGAGTTTCATCGTGCGCGGTAAGGGCAACCCGGATAGCTTC--AACAGCTG 456 Query 45528 CA--CATGGTGCTGGTCGTTTACTGTCGCGCTCAGCGGCAGTGAAACAATTCAGTCTGGA 45585 || || ||||| || || || ||| | ||| ||| | || | | || | Sbjct 457 CAGCCACGGTGCCGGCCGCACCATGAGCCGCACCAAGGCCAAGAAGCTGTTTACTGTGCA 516 Query 45586 AGACCATATCCGTGATACCGAGGGTGTGGAATGCCGTAAAGACAAAGACGTTCTTGATGA 45645 |||||| || || || | ||||||||||||||||| || ||||| | || || Sbjct 517 AGACCAGATTGATGCCACGGCCGGTGTGGAATGCCGTAAGGATGCCGACGTGATCGACGA 576 Query 45646 AACACCGAAGGCATATAAG 45664 | |||| ||| || ||| Sbjct 577 GATCCCGATGGCCTACAAG 595 >seq13940 Length=4524 Score = 84.2 bits (92), Expect = 4e-11 Identities = 123/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 44630 TTCAAACACCTAGCCGTGATGCCTGATGTACACTGGGGAATGGGCGCGACCATTGGTTCG 44689 |||| ||| | ||||||||||| || || |||| || || ||||| ||||| ||| Sbjct 418 TTCAGCCACGTGGCCGTGATGCCCGACGTGCACTACGGTATTGGCGCCACCATCGGTAGC 359 Query 44690 GTTATTGCGACTA--AAGGTGCGATTATTCCTGCCGCAGTGGGTGTTGATATTGGTTGTG 44747 || || | || | |||| | || ||||| || || ||||| || ||||||||||| | Sbjct 358 GTGATCCCTACGATCAAGG--CCATCATTCCCGCTGCGGTGGGCGTGGATATTGGTTGCG 301 Query 44748 GGATGATTGCCCAACAAACCTCGCTGGTTGCTGCTGACCTGCCCGATAACCT 44799 | ||||| ||| | ||| ||||||| || || || || |||||||| Sbjct 300 GAATGATCGCCTGCAAGACCACGCTGGTCGCCAGCGATCTACCGGATAACCT 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 866135185446240