Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq107328 111 5e-20 seq53202 104 7e-18 seq34329 93.3 1e-14 seq109371 91.5 4e-14 seq109454 82.4 2e-11 >seq107328 Length=16160 Score = 111 bits (122), Expect = 5e-20 Identities = 208/304 (68%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 30085 GTCGACGATGATCTCTGTTGTGTAGCGGTCCTGACCGTCCTGCGCCTGCCACTTTCGAGT 30144 |||| | |||||||| || |||||| ||||| || |||| |||||||||| || || Sbjct 15773 GTCGGCAATGATCTCGGTGGTGTAGGTGTCCTTGCCTTCCTTGTCCTGCCACTTGCGGGT 15832 Query 30145 TCTGAGTGAACCCTCGACGTACAGTTGCTGACCCTTCTTTACGTGCTGCCCGACGATCTC 30204 | || || |||||||| | | | |||||||| | || | || | || || Sbjct 15833 CTTCAGGCGGCCTTCGACGTAGACGGGGCGGCCCTTCTTCAGGTATTCGCCAGCAATTTC 15892 Query 30205 CGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGTTGCTGGCCGGT 30264 ||||| || ||| |||||||||||||||||||| ||||| | | |||||| Sbjct 15893 AGCCAAACGGTCGTTGAAAACCACGCGGTGCCATTCGGTCTCTTCCTGGCGTTCGCCGGT 15952 Query 30265 CTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACC--GCATTGCCG 30322 || || ||||||| | | ||||||| ||| |||| || |||| || |||| Sbjct 15953 CTCGCGGTTCTTCCAGTTGCGGGTGGTGGCCAGGCTGATCGTG--CACCAGGCGCCGCCG 16010 Query 30323 TTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAACCAGAATGACTTTGTTA 30382 |||| | || || || ||||| | |||| |||||| | || ||||||||||| Sbjct 16011 CTGGGGTTGTAACGGACCTCGGGGTCGCGGCCGAGGTTGCCGATGAGGATGACTTTGTTG 16070 Query 30383 ACGC 30386 |||| Sbjct 16071 ACGC 16074 >seq53202 Length=9363 Score = 104 bits (114), Expect = 7e-18 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 30175 ACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTG 30234 ||| || || | || ||| || |||||||| |||| ||||||||| | |||||| Sbjct 2033 ACCTTTTTTCAGGTACTGGCCAACGATCTCGGCCAGACGGCCGAAGAACGAGATGCGGTG 1974 Query 30235 CCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGC 30294 |||||||||| |||| |||| |||||| | |||||| ||| | | |||||| Sbjct 1973 CCATTCGGTGGTTTCCTTCTGCTCGCCGGTGTTCTTGTCTTTCGAACGGAACGAGGTGGC 1914 Query 30295 GAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCACC 30354 | || ||||||| | || | |||| ||||||| ||||| ||||||| || | || Sbjct 1913 CACGGCAATGTTGGCGATGGCGTCGCCGCTGGGCATGTAGCGGATTTCCGGATCGCGCCC 1854 Query 30355 GACGTTGCCAACCAGAATGACTTTGTTAAC 30384 | |||||| || | |||||||| || || Sbjct 1853 CAGGTTGCCGACGATGATGACTTTATTCAC 1824 >seq34329 Length=1424 Score = 93.3 bits (102), Expect = 1e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 30220 GAACACCACGCGGTGCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCA 30279 ||||||||| |||||||||||||| ||| | | | |||||| |||||||| ||||| Sbjct 11 GAACACCACACGGTGCCATTCGGTAGCCTCGCGGCGTTCGCCGGTTTGCTTGTCTTTCCA 70 Query 30280 GCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGT 30339 | | ||| ||||||| | ||||| ||||| ||| | ||| |||| | ||| Sbjct 71 GGTTTCGGTGGTGGCAATGGTGACGTTGGCGACCCGGTCGCCACTGGGGAAGGTGCGCAC 130 Query 30340 TTCCGGGTCACCACCGACGTTGCCAACCAGAATGACTTTGTTAACGCCTCTCATGCTGCT 30399 ||| ||||| | || | ||||| || | |||||||| || ||| | ||| || | Sbjct 131 TTCAGGGTCGCGGCCCAAATTGCCGACGATGATGACTTTATTGACGGATGCCATAGTGAT 190 Query 30400 TTCCTC 30405 |||||| Sbjct 191 TTCCTC 196 >seq109371 Length=32687 Score = 91.5 bits (100), Expect = 4e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 32998 CCGCTTGAACTCGACGACCCAGACCCAGGGATTCGCGGCCCAGGAGTCGGCGCCGTTGAT 33057 ||| ||||||||||||||||| |||||||| || ||| |||||||| ||||||||| | Sbjct 6302 CCGTTTGAACTCGACGACCCAAACCCAGGGGTTGGCGACCCAGGAGCCGGCGCCGTGCAG 6361 Query 33058 CGACTCCCACAGC 33070 ||||||||||||| Sbjct 6362 CGACTCCCACAGC 6374 Score = 80.6 bits (88), Expect = 8e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 33221 TGCAAGCGCTCGACCCGGACGCTGACGATCTCCAGCAGGATGCGGGAGGCCCAGCGGGGC 33280 |||| |||||| | ||||||| | |||||||||| |||||| ||||||||||||||| Sbjct 6534 TGCAGGCGCTCCAGGCGGACGCCGGTGATCTCCAGCGTGATGCGAGAGGCCCAGCGGGGC 6593 Query 33281 ATGTGGATACTTGG 33294 |||||||| || || Sbjct 6594 ATGTGGATGCTGGG 6607 >seq109454 Length=55839 Score = 82.4 bits (90), Expect = 2e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 33219 CCTGCAAGCGCTCGACCCGGACGCTGACGATCTCCAGCAGGATGCGGGAGGCCCAGCGGG 33278 |||||| ||||| || || ||||||||||||||||||||||||||| |||| ||| | Sbjct 46922 CCTGCAGCCGCTCCACGCGCACGCTGACGATCTCCAGCAGGATGCGGCTGGCCACGCGCG 46863 Query 33279 GCATGTGGAT 33288 |||||||||| Sbjct 46862 GCATGTGGAT 46853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145446082763344