Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq18243 154 3e-33 seq31939 98.7 2e-16 >seq18243 Length=2233 Score = 154 bits (170), Expect = 3e-33 Identities = 269/386 (70%), Gaps = 8/386 (2%) Strand=Plus/Minus Query 1956 CCAAAGCCGCCGCTGTTCTGGGGCACGATGCCCAGCAGCTGCGGCGGTACCCGTAACGCG 2015 || ||||||||| ||| ||||||||||||||||||||| ||||| ||||| |||| Sbjct 468 CCGAAGCCGCCGGCGTTGGCGGGCACGATGCCCAGCAGCTGGGGCGGCACCCGATGCGCG 409 Query 2016 GCCAGCATGTCATCGCGGGTCACGCTCTTGATGCCGGTGAATTCATCCCTTGCCGCCACC 2075 ||||| | ||| ||||| | | ||||||| ||| || || ||| | || || | | Sbjct 408 GCCAGGACGTCGTCGCGCGAGGTGTTCTTGATCCCGACAAACTCGTCCTTGGCGGCGATC 349 Query 2076 TCACTGACCGGGATCACCTGCAGGCCGTCCTTCTTCCCGTTGGGCGAGTGAACGAACAGG 2135 || |||| ||| || | ||| | ||| | || | |||| || ||||| | ||| ||| Sbjct 348 TCGCTGATCGGAATGATCTGGATGCCCTTCTCATGCCCGCCTGGTGAGTGGATGAAGAGG 289 Query 2136 TTCTTGAAATTGCCCGGCCCGCGCGACTGCCGCAGTGCGTCGCGT--AACGCATCCACGT 2193 ||| ||| || |||||||| || |||| | |||| | | ||||| || | Sbjct 288 TTCCGGAAGTTCCCCGGCCCCTTGCCCTCGCGCA--TCTTCGCCTTGATGGCATCGACCT 231 Query 2194 C--CATGCCCTCGGGTTGGGGATCGGTCATGTAGAGGATGTAGCCGGCGTGCGAACCGTT 2251 | | || ||| ||| || ||||| || ||||| ||||| ||||||| ||||| Sbjct 230 CTTCCTG-GCTCATGTTCTGG-TCGGTGCTGCGCAGGATAAAGCCGACGTGCGAGCCGTT 173 Query 2252 GTTGTAATACTTCCGGCGGAAAAGCGTGGCCGACTCATTCAGCAACGCGGCCTGTACGGC 2311 | ||| ||||| |||||||| || || || | ||| || || ||||| | ||| | ||| Sbjct 172 GAGGTAGTACTTGCGGCGGAACAGGGTCGCGGCCTCGTTGAGGAACGCTGACTGCAGGGC 113 Query 2312 TGGCATCCATTCCGGCAGGCCGTAGA 2337 | |||| || |||||||||| Sbjct 112 GCCAAGGTATTCGGGTAGGCCGTAGA 87 >seq31939 Length=505 Score = 98.7 bits (108), Expect = 2e-16 Identities = 252/381 (66%), Gaps = 7/381 (2%) Strand=Plus/Plus Query 3985 CGAGGAAGATGTGCGCTTGGCTCTTGGATGCGCTCAGGAAAATCTGGTTGCGGCCGGTGG 4044 || ||||| | |||| ||| ||| || || ||||||||||| |||| | ||||| Sbjct 109 CGCGGAAGTTCAGCGCCTGGGCCTTCGAGGCCGACAGGAAAATCTTGTTGTGACCGGTCT 168 Query 4045 TCAGCGCGTCGATCAGCGCCTCGCGGGCGAAGTAGTAGGTGGCACCGATCTGGCGCGACT 4104 |||||| || || |||||| ||||| ||| | | || || || |||||||| | || Sbjct 169 CGAGCGCGGTGACCAACGCCTCACGGGCAAAGAACTCCGTTGCCCCAATCTGGCGGGCCT 228 Query 4105 TCAGGATGATGCGCGTGCGTTCGTTGCCCGCCCGGT--ACCAATCGCGCTGGTAGTCGAA 4162 ||||||| || |||||||| | | | | | | ||| ||| |||||| ||| Sbjct 229 TCAGGATCATCCGCGTGCG--CAGCGACGAGCTGTTCAGCCAGTCGAGCTGGTGTGGGAA 286 Query 4163 ACAGCCATCCACGAACGCCGTCTGCAGGCGCTCGATCTCTTCCTCGCTGAACTCGTTCTT 4222 || | || ||| ||| | | || ||| || || | ||| | ||| Sbjct 287 GCACCACGCCTCGAGGGCCTTGCGAAGTTCGACGACCTGGTCGGCTGAGAAATGGTTGCC 346 Query 4223 GCGCGC---CTTCTTCTTGGGCGCTGCGTTGCGGTTGGCCACCGCCGGATTGAGGTCAGC 4279 |||||| || |||||||||||||||||||||| ||| | ||| ||||||| | Sbjct 347 GCGCGCCGGCTCCTTCTTGGGCGCTGCGTTGCGGGCGGCGATGTTCGGGCTGAGGTCCGT 406 Query 4280 CTCGTTGCCACCGCCCTGGTACCGTTGAATGCGCGCCTGCCGTTCCAACTGGCGGTGCAG 4339 |||| | || || | |||| | || ||||| | || | |||||| | || Sbjct 407 CTCGGTCCCGCCATCAATGTACTTGCGGATCCGCGCGACGCCCTCGAGCTGGCGCTTGAG 466 Query 4340 CAGATCAATCTCTTTGAAGTC 4360 |||||| || || |||||||| Sbjct 467 CAGATCGATTTCCTTGAAGTC 487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107016896060294