Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq58313 127 2e-24 seq107681 118 1e-21 >seq58313 Length=1260 Score = 127 bits (140), Expect = 2e-24 Identities = 353/535 (66%), Gaps = 11/535 (2%) Strand=Plus/Plus Query 50197 TCAACGCTTTCGATAATATTCCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGA 50256 || ||||| |||| | || || ||||||| || || | ||| ||||| || |||| Sbjct 93 TCCACGCTATCGACACCATACCATGTGTGCAGAAGAAAGCCGAATGGGCGCTGCGCTGGA 152 Query 50257 CTaaaaacaaaaaaCTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTG 50316 || ||| || ||||| |||| ||||| ||||| ||||| |||||||| Sbjct 153 TCAACAACGGCAA-----CTTTG-CCGAGCGTTTGGTGGCATTTGCTGCGGTTGAAGGCA 206 Query 50317 TGtttttttCCGGTAGCTT-TGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCC 50375 | || ||||| ||||| || ||| | || || | | |||| || | ||||| Sbjct 207 TCTTCTTTTCGGGTAGTTTCTGCT-CTATCTTCTGGCTGAAAAAACGCGGATTGATGCCA 265 Query 50376 GGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCG 50435 || || || || || |||||| |||| |||||||| ||||| |||| || ||||| Sbjct 266 GGGCTGACTTTCAGTAACGAGCTGATATCGCGCGATGAAGGTTCGCACTGCGAATTTGCC 325 Query 50436 TGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAATTTTGGACATG 50495 || || |||| | || | ||| || | | || || | | | || Sbjct 326 TGCCTGCTGTACAGCATGCTGGAAAAC--AAGCTGAGCACT-GAGGCGGTCACCAAAATT 382 Query 50496 TTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTG 50555 | ||||| || || || || ||||| || ||| ||| ||||| | || || | || Sbjct 383 ATTAAAGACGCGGTAGAGATAGAAAAGGAATTTATCAGCGACGCGCTGCCGGTATCGTTA 442 Query 50556 TTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTG 50615 | || |||||||| | ||||| | |||| ||||||||||| || ||||||| | || Sbjct 443 ATAGGTATGAACGCCAAACTGATGAGTCAGTATATTGAGTTTGTAGCCGACAGATGGCTG 502 Query 50616 TTGCAGCTGGGACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAAC 50675 | ||||| | |||||| || |||| || || ||| |||||| | | Sbjct 503 GGCGAACTGGGCTATCCGAAAGTATACGGTGCATCAAATCCGTTTGATTTTATGGAGATG 562 Query 50676 ATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATACAAAA 50730 |||||| | |||||||||| |||||||| || | ||| || ||||| ||| ||| Sbjct 563 ATATCGCTACAGGGCAAAACCAACTTTTTTGAGAAACGCGTGGGCGATTACCAAA 617 >seq107681 Length=5071 Score = 118 bits (130), Expect = 1e-21 Identities = 355/540 (66%), Gaps = 21/540 (4%) Strand=Plus/Plus Query 50197 TCAACGCTTTCGATAATATTCCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGA 50256 || |||| | |||| ||||| ||||||| || |||| || ||||| || |||| Sbjct 3983 TCCACGCGGTTGATACGATTCCATGTGTGCAAAAGAAGGCAGAGTGGGCGCTGCGCTGGA 4042 Query 50257 CTaaaaacaaaaaaCTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTG 50316 || ||| | ||||| |||| ||||| || || ||||| |||||||| Sbjct 4043 TCAACAACGGCAC-----CTTTG-CCGAGCGTTTGGTAGCATTTGCGGCTGTTGAAGGCA 4096 Query 50317 TGtttttttCCGGTAGCTTTGCAGCCATATT----TTACATTAAAACCTTAGGCATAATG 50372 | || ||||| || ||||| | || || ||| | ||||| | ||| | ||| Sbjct 4097 TTTTCTTTTCAGGGAGCTTCTGTTCTATCTTCTGGTTAAA--AAAACGT--GGCCTGATG 4152 Query 50373 CCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAG--ACT 50430 ||||| | || ||||| ||||| |||| |||||||| ||||| | ||||| | | | Sbjct 4153 CCCGGATTGACCTTTAGTAACGAACTGATATCGCGCGATGAAGG--TTCACACTGCGAAT 4210 Query 50431 TTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAATTTTGG 50490 |||| || || ||| || || | ||| ||| | | || | ||| || || Sbjct 4211 TTGCCTGCCTGCTTTACGGTATGCTGGAGAAT--AAACTGAGCACA-GAAGCAGTTACCA 4267 Query 50491 ACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGG 50550 | || | | || || || || || |||||||| ||| | || ||||| || || || Sbjct 4268 AAATTATTACCGACGCGGTAGAGATTGAAAAAGAATTTATTACCGACGCATTGCCGGTAT 4327 Query 50551 CATTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGAT 50610 | || | || |||||||| | ||||| || | |||||||||||||| || ||| | | Sbjct 4328 CGTTAATAGGGATGAACGCTAAATTGATGAGCCAATACATTGAGTTTGTGGCTGACCGTT 4387 Query 50611 TGTTGTTGCAGCTGGGACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGA 50670 ||| | ||||| | || ||| || ||| |||||| ||| |||||| Sbjct 4388 GGTTAGGCGAACTGGGTTATCCTAAAGTGTACGGCGCATCTAACCCGTTTGATTTTATGG 4447 Query 50671 ATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATACAAAA 50730 | | ||||| | | |||||||| || || || |||| | | ||||| || ||| ||| Sbjct 4448 AGATGATATCCCTACAAGGCAAAACCAATTTCTTTGAAAAAAGGGTAGGAGATTACCAAA 4507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487864917733200