Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_023744.1 Length=60588 Score E Sequences producing significant alignments: (Bits) Value seq110673 114 5e-21 seq109290 109 2e-19 seq108438 102 3e-17 seq13940 82.4 3e-11 >seq110673 Length=5201 Score = 114 bits (126), Expect = 5e-21 Identities = 163/229 (71%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 49384 GCCGGCCTGCCGTTCGTCCACCCGCATGTGGCGCTGATGCCCGACGCGCACGCCGGCAAG 49443 ||| | |||||| | || | ||| |||||| |||||||||| ||||| |||| Sbjct 924 GCCAGGCTGCCGGTGGTGTTCAAGCACGTGGCGGCCATGCCCGACGTGCACGTGGGCATC 865 Query 49444 GGTTCATCGGTCGGCACCGTCATCCCGACTATCGACGCCGTGATCCCGGCCGCGGTGGGC 49503 ||| | | || ||| | || |||||||| || | ||| | |||||||| || |||||| Sbjct 864 GGTGCGACCGTGGGCTCGGTGATCCCGACGCTCAAGGCCATCATCCCGGCGGCCGTGGGC 805 Query 49504 GTGGACATCGGCTGCGGGATGATCGCCGCCCGCACCATCTACACCGAGGACGACCTGGAC 49563 ||||||||||||||||| ||||| ||| | |||| |||| || |||||| | Sbjct 804 GTGGACATCGGCTGCGGCATGATGGCCTGCAAGACCACGCTGACCGCCGAGGACCTGCCC 745 Query 49564 GGCCGGGACCTCGCCGCGCTGCGGCACGCCATCGAGGGCGCGATCCCGC 49612 | | |||||| || ||||| |||||||||| |||| | |||| Sbjct 744 GATAG---CCTCGCGGCCCTGCGCTCCGCCATCGAGCGCGCCGTGCCGC 699 >seq109290 Length=7648 Score = 109 bits (120), Expect = 2e-19 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 25495 GCCTACGAGTGGCGCTCCGACCTCGGGAATACGCAGGCCGGCGACGGGGTGCGGTTCAAG 25554 ||||||||| | ||| |||||||||| || | ||| |||||||||| ||||| |||||| Sbjct 7258 GCCTACGAGGGCCGCACCGACCTCGGCAACAGCCAGCCCGGCGACGGCGTGCGCTTCAAG 7317 Query 25555 GGGCGCGGCCCTATCCAAATCACCGGCCGCTACAACTACC 25594 || ||||||| ||||| ||||||||||| ||||||||| Sbjct 7318 GGCCGCGGCCTGATCCAGCTCACCGGCCGCAACAACTACC 7357 >seq108438 Length=3402 Score = 102 bits (112), Expect = 3e-17 Identities = 178/256 (70%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 49384 GCCGGCCTGCCGTTCGTCCACCCGCATGTGGCGCTGATGCCCGACGCGCACGCCGGCAAG 49443 ||| ||||||| ||||| | ||| | || |||||| |||| ||| ||||| Sbjct 2986 GCCCGCCTGCCCATCGTCTTCAAGCACATCGCCGCGATGCCGGACGTGCATTACGGCATC 3045 Query 49444 GGTTCATCGGTCGGCACCGTCATCCCGACTATCGACGCCGTGATCCCGGCCGCGGTGGGC 49503 || | | |||||| | |||||||| || ||| | ||| | |||||||| || ||||| Sbjct 3046 GGCGCGACCGTCGGCTCGGTCATCCCCACCATCAAGGCCATCATCCCGGCGGCCGTGGGT 3105 Query 49504 GTGGACATCGGCTGCGGGATGATCGCCGCCCGCACCATCTACACCGAGGACGACCTGGAC 49563 ||||||||||||||||| ||||| ||| | |||| |||| || |||||| | Sbjct 3106 GTGGACATCGGCTGCGGCATGATGGCCTGCAAGACCACGCTGACCGCCGAGGACCTGCCC 3165 Query 49564 GGCCGGGACCTCGCCGCGCTGCGGCACGCCATCGAGGGCGCGATCCCGCTGTCGCCGGGC 49623 | | ||||||| | ||||| ||||||||| |||| | |||| |||| || Sbjct 3166 GAC---AACCTCGCGCCACTGCGCGCGGCCATCGAGCGCGCCGTGCCGC-ACGGCCGCGC 3221 Query 49624 A-ACTACAACCGCGAC 49638 | | |||||||||| Sbjct 3222 ACCCGGCAACCGCGAC 3237 >seq13940 Length=4524 Score = 82.4 bits (90), Expect = 3e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 49408 CATGTGGCGCTGATGCCCGACGCGCACGCCGGCAAGGGTTCATCGGTCGGCACCGTCATC 49467 || ||||| |||||||||||| |||| ||| | || | | |||| | ||| ||| Sbjct 412 CACGTGGCCGTGATGCCCGACGTGCACTACGGTATTGGCGCCACCATCGGTAGCGTGATC 353 Query 49468 CCGACTATCGACGCCGTGATCCCGGCCGCGGTGGGCGTGGACATCGGCTGCGGGATGATC 49527 || || ||| | ||| | || || || |||||||||||||| || || ||||| |||||| Sbjct 352 CCTACGATCAAGGCCATCATTCCCGCTGCGGTGGGCGTGGATATTGGTTGCGGAATGATC 293 Query 49528 GCC 49530 ||| Sbjct 292 GCC 290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193504137619100