Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_024381.1 Length=43056 Score E Sequences producing significant alignments: (Bits) Value seq84563 96.9 1e-15 >seq84563 Length=11991 Score = 96.9 bits (106), Expect = 1e-15 Identities = 221/327 (68%), Gaps = 17/327 (5%) Strand=Plus/Minus Query 2266 GGCGCACGCGGCCCCGGTAAGACGCTTACGCAGCTTATGCGCTTTTATCGTAACGTCGGC 2325 ||||| || || || || ||||| ||| ||||||||||||||| ||||||||||| Sbjct 6996 GGCGCGCGTGGTCCTGGAAAGACCGATACCCAGCTTATGCGCTTTCGACGTAACGTCGGT 6937 Query 2326 AAAGGTTACGGCAAGTTCTGGCGCGGCGTTATCTTCGACTTGGAATTTGACCATTTGGGC 2385 | || ||||| |||||||| ||| ||||||||||| || | | | || | | | Sbjct 6936 ATTGGCTACGGTCCATTCTGGCGAGGCATTATCTTCGACCGCGAGTATAAGCAGCTTGAC 6877 Query 2386 GGCCTTGTTGCCGAA-TCTAAAAAATGGTTTGGCGATAACGGAAAGCTAAAAGACGGCGG 2444 | |||| || | || |||| |||||| || || | ||||||| | Sbjct 6876 -GACTTGGTGACTAAGGCTAAGCGCTGGTTT----AT-----GCAGTTCCAAGACGGTGC 6827 Query 2445 CAAGTTTTACGAATCAACGTCGGCTTATAAATGGGTTTGGCCGACTGGCGAAGAACTGTT 2504 ||| ||| | || | || |||||| |||||| |||||||| ||| || | Sbjct 6826 TGTCTTTCTGGAAAGCAATTCTACATACAAATGGCGTTGGCCTACTGGCGAGGAATTGCT 6767 Query 2505 GTTTCGGCACGTTAAGAAACTGTCGGATTACGA---AGGCTTCCACGGTCACGAATACCC 2561 |||| | ||| || || | ||||| || | |||| ||||||||||| || || Sbjct 6766 -TTTCCGAACGGCAATGAA--GCCGGATGACTATTGGAGCTTTCACGGTCACGAGTATCC 6710 Query 2562 GTTTATCGGTTGGAACGAACTTACGAA 2588 || ||||| |||||||| |||||||| Sbjct 6709 ATTCATCGGATGGAACGAGCTTACGAA 6683 Score = 93.3 bits (102), Expect = 1e-14 Identities = 87/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 7939 CCGAATGGTCGTACAACGTCGGCGTTAAGGGCTTCGCTTGGGACAAGGCGAACGGCGGCA 7998 |||| |||||||| ||||||||||| ||||||||| | ||||||||||| |||||||| Sbjct 1406 CCGAGTGGTCGTATAACGTCGGCGTCAAGGGCTTCACCTGGGACAAGGCCAACGGCGGGC 1347 Query 7999 AGTCGCCGACCGACG-CGGCGTTGTTCACTTCGACCAATTGGGACAAG 8045 | | ||||| ||| ||||| | |||| || | |||||||||||| Sbjct 1346 ATGCTCCGAC-GACTTCGGCGCTTCTCACGGCGTCGAATTGGGACAAG 1300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137475821504516