Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq18243 215 1e-51 seq96094 136 1e-27 >seq18243 Length=2233 Score = 215 bits (238), Expect = 1e-51 Identities = 327/460 (71%), Gaps = 14/460 (3%) Strand=Plus/Minus Query 7748 CAATGGCTTCACCTCGTTGCGCGCGAACACCAGGGCGGCCTTCTCCACGTCGCCGAATCC 7807 ||| ||||| | |||||||||| ||||||| | |||||| || || || ||||| || Sbjct 520 CAACGGCTTGATCTCGTTGCGCTCGAACACGGCCGAGGCCTTATCGACATCACCGAAGCC 461 Query 7808 GCCGGTGTTGTTCGGGATGATGCCCATGAGCTGCGGCGGCACGCGGTGCGCGGCGAGTTG 7867 ||||| |||| || | |||||||| ||||| |||||||| || |||||||| || Sbjct 460 GCCGGCGTTGGCGGGCACGATGCCCAGCAGCTGGGGCGGCACCCGATGCGCGGCCAGGAC 401 Query 7868 GTCGTCGCGCGTGACGTTTTTGACGTTCCAG---AACTCGTCCTTCGCGGCCACCTCGGA 7924 ||||||||||| | ||| |||| ||| | ||||||||||| ||||| | |||| Sbjct 400 GTCGTCGCGCGAGGTGTTCTTGA---TCCCGACAAACTCGTCCTTGGCGGCGATCTCGCT 344 Query 7925 CACCGGTAGCAGCTGGATCCCGTCCTTCTTGCCGTTAGGCGCGTACATGAACAGGTTGCG 7984 | ||| | | |||||| || | || | ||| || | || ||||| ||||| || Sbjct 343 GATCGGAATGATCTGGATGCCCTTCTCATGCCCGCCTGGTGAGTGGATGAAGAGGTTCCG 284 Query 7985 GAAATTGCCCGGCCCCTTG---GCACTCTTCATCGCCTCGCGCAGCGTGTCGACATCCTC 8041 ||| || |||||||||||| | | | || |||||| | | | ||||| || || Sbjct 283 GAAGTTCCCCGGCCCCTTGCCCTCGCGCATCTTCGCCTTG---ATGGCATCGACCTCTTC 227 Query 8042 TTGCCTC-TGCGCCGCGTCGGTCATGTACAGGATGAAACCGGCGTGGGAGCCGTTTTTGT 8100 || ||| || | | |||||| || |||||| || ||| |||| |||||||| || Sbjct 226 CTGGCTCATGTTCTG-GTCGGTGCTGCGCAGGATAAAGCCGACGTGCGAGCCGTTGAGGT 168 Query 8101 AGTACCGGCGGCGGAACAGCGTGGCCGATTCGTTCAACCATGTGGCGTTCAACGCGGACA 8160 ||||| |||||||||||| || || | ||||| | | | | | || ||| | Sbjct 167 AGTACTTGCGGCGGAACAGGGTCGCGGCCTCGTTGAGGAACGCTGACTGCAGGGCGCCAA 108 Query 8161 GGTATTCCGGCAGGCCGTACACCTCCTGATTGATGTCCGG 8200 ||||||| || |||||||| || | ||| ||||||||||| Sbjct 107 GGTATTCGGGTAGGCCGTAGACGTTCTGGTTGATGTCCGG 68 >seq96094 Length=644 Score = 136 bits (150), Expect = 1e-27 Identities = 361/544 (66%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 38772 CGCCGGCTCGCTCAGCGGCACGCGCAGCTCCTTTTCCATCTTCATCCGGTCGGGCGGCAC 38831 |||||| |||||||||| | ||| ||||| || ||||||||| |||| || | Sbjct 23 CGCCGGTGCGCTCAGCGGAATGCGGTGCTCCCGGTCGGCCTTCATCCGTTCGGCGGGAAT 82 Query 38832 GATCCAGATACGCCGGTCCAGGTCGAACTCT-TCCGGCTTGGCCTCCAGTGCCTCGGTCG 38890 |||||||| | | ||||||||| || ||| | | | | || ||||| | | Sbjct 83 GATCCAGACCTTCTTGACCAGGTCGATTTCGCTCCAGACCGCGC-CGAGGACCTCGCTGG 141 Query 38891 TGCGCACACACGTGAGGATGAGGAGGTGCAGCACGCGGGCCGCCGGGGCT-GCGCGTTCC 38949 ||||| | ||| ||||| | | |||| ||||||| ||| | || || | | Sbjct 142 TGCGCGCCACCGTCAGGATCGTAAATTCCAGCGCGCGGGCGGCCACGCCTTGCACCCTG- 200 Query 38950 GCAAGTTCCGGCATGAAGCTGGGGATGTCCGCCCAGGGCAGGGCGGGATGGTGTTTCACC 39009 || || | ||||||| || | |||| | |||| ||||| ||||| | ||| Sbjct 201 GCCAGGGCTTTCATGAAGTGAGGCAGCTCCGGATACGGCAAGGCGGCGTGGTGCTGAACC 260 Query 39010 TTCTTGGCGCGATCGCGCTT--CGGCAGAAGCTTGTCCAGGTGGCCGCGCCAGAGCGCCG 39067 |||| || | | | | |||||| | ||||||||| || || |||| | || | Sbjct 261 TTCT--GCACCTTGGTTTTGGCCGGCAGGATCTTGTCCAGATGACCCTTCCAGCGGGCGG 318 Query 39068 GGTTCTCGCCGCTGCGCTTGCCAAGGACCTTGGCGGCATCGAGCACGCACTCAATGCGCC 39127 |||| ||||| ||| | |||| |||| |||| ||||||||| ||| || || | Sbjct 319 GGTTGTCGCCCGCGCGATGGCCATAGACCGTGGCCCAGTCGAGCACGTTCTCGATCCGGC 378 Query 39128 CGCGTACGCGGCTGGCCGTCTCCGCCTTCTTCATCCAGATGGGTTGCAGTACGCGCACGA 39187 |||| ||||||||||||||||| | ||| | ||||||||| | || ||| ||| | Sbjct 379 CGCGCACGCGGCTGGCCGTCTCGGTCTTGGACTGCCAGATGGGCTCGAGCACGGCCACCA 438 Query 39188 CCATGCCCGTGTCGATGTCGCGCACGTCCACATCGCCGATGACCGGGTAGGCGTAGGTCT 39247 | | ||| || | || | || || | ||||||| ||| |||||||||| Sbjct 439 CGTGACGCGTTTCCACCTCACCGACCGGCAGCTTGCCGATGCGCGGCGCGGCGTAGGTCG 498 Query 39248 CAAGGGTGTTTTCCCACTGCTGGGCGTGCTTGGCGTTCCTCCAGCTGTCCCGGTGGGCAT 39307 || ||| | | |||||||| | ||||||| |||| | ||||| | || || ||| | Sbjct 499 TCAGCGTGCTCTTCCACTGCTTGACGTGCTTTTCGTTTCCCCAGCCGGCCTTGTTGGCCT 558 Query 39308 TGAT 39311 ||| Sbjct 559 CGAT 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127715926602968