Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_025443.1 Length=52869 Score E Sequences producing significant alignments: (Bits) Value seq23773 141 3e-29 seq24728 123 8e-24 seq53471 109 2e-19 seq27244 107 6e-19 >seq23773 Length=234 Score = 141 bits (156), Expect = 3e-29 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 19138 TTGCGTGGAATGAATTTATCGGACTGGGTATCAATAACGGTCCGTCTATTCGTACCTATC 19197 ||||||||||||| ||| | | || ||| |||||||||| ||| |||| |||| Sbjct 234 TTGCGTGGAATGACTTTGTTAGCCTTGGTGCTGATAACGGTCCATCTGTTCGCCAGTATC 175 Query 19198 CGGGTGTTGAAGGTCGTCGTGGTAATTTCGTCGAAGCGGAATTTGCTATTGATGTTCAGA 19257 ||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||| | Sbjct 174 CGGGTGTTGAAGGTCGTCGTGGTAATTTCGTAGAAGCAGAATTTGCTATCGACGTTGCCA 115 Query 19258 TGGTCGCACCTGATCTGGGTATCCTGTT 19285 || | ||||||| ||||||||||||| Sbjct 114 TGATTTCACCTGACATGGGTATCCTGTT 87 >seq24728 Length=313 Score = 123 bits (136), Expect = 8e-24 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 4250 TATTATGAAACAAACCCTGTAGCGTTCATCCTCGACTGGGCGTTTACTTATGACCCGCGT 4309 |||||| | |||||| || || || || || |||||| | || || |||||||| Sbjct 228 TATTATTCTAAAAACCCCGTCGCATTTATTCTAGACTGGTGCATAACCTACGACCCGCGC 169 Query 4310 AACGTTGGAACTGAATTCCCCCCAAATATGCCTTTCTGCCTGTTCGAAAGACAGATCGAC 4369 ||| || || || | || ||| ||||||||| | | || |||||||| ||| Sbjct 168 AACTCGGGTACCGACATTCCTACAACAATGCCTTTCGGTTTATTTCTCAGACAGATTGAC 109 Query 4370 ATGATTCAGTTTGTTTATGAAGCGCTGGAAGATAAAGAAAAAGGATTATGGGAAAAATCC 4429 || ||||||| |||||||| |||||||| | |||| ||||| || | |||||| ||| Sbjct 108 TTGGTTCAGTTCATTTATGAATCGCTGGAAAAGAAAGCCAAAGGTTTGTTGGAAAAGTCC 49 Query 4430 CGTGACTATGGTGCAACCTGGGTAGC 4455 |||||||| |||||||| ||||| || Sbjct 48 CGTGACTACGGTGCAACGTGGGTTGC 23 >seq53471 Length=474 Score = 109 bits (120), Expect = 2e-19 Identities = 256/384 (67%), Gaps = 2/384 (1%) Strand=Plus/Plus Query 9659 GCGAACAACAGGTAAAACTGGAATTCATCACGCCTAACCAGACCAGTTCAGTTGATATCG 9718 ||||||| ||||| || || ||||| |||| ||| | | | ||| || ||||| | Sbjct 88 GCGAACAGCAGGTTAAGCTTGAATTAGTCACACCTTCTGAAAGTAATTCTGTGGATATTG 147 Query 9719 ACCGTACTATCAAACGCCTGGATACCAGTATTGCCCGTGCGTTACTGGCAGATTTTATGT 9778 |||| || || ||||| |||| |||| || || || || || ||||| ||| ||| Sbjct 148 ACCGAACAATTAAACGTTTGGACGTTGGTATAGCACGCGCATTGCTTGCAGACTTTTTGT 207 Query 9779 TTTTCGGAACGGGCGGAAATACCGGAAACAATGCTAACCTGGGTAACCGTACTGAATTAT 9838 | || || || ||| || || || || | ||||| | ||| |||| || || || | Sbjct 208 TCTTTGGTACCAACGGTAACACGGGTAATCAGTCTAACTTAGGTGACCGCACAGAGTTGT 267 Query 9839 GGATCCGTGCAATGCAGTCACGCATTGATAGTATCATTGAATGTGTAAACCGTCAGTTAA 9898 ||||| || ||||| || || |||| | || ||| | || || |||||| Sbjct 268 GGATCAAAGCGATGCAATCCCGGGTTGAATCCAACACATCGTGTATTAATCGCCAGTTAG 327 Query 9899 TCCCACAGTTGTGGTCGCTGAATGCTTTTCCTGATGAATACCGTCCGTCTATTCGCGCCG 9958 | ||||| ||| |||||||||||||| || |||||| || || | || || | Sbjct 328 TGGATCAGTTATGGAAACTGAATGCTTTTCCAGAAGAATACAAACCAACTTTACGTGCTG 387 Query 9959 GGTCAATCAGTAAAGACAGTATTGAAACACTGACAACTGCACTTGCA-CGACTTGCACAA 10017 | |||| | |||||| | ||| || || || || || ||| ||||| Sbjct 388 GTGCAATAACTAAAGAATCTGCTGATGTGTTGGTCACGGC-GTTACAGAAACTGGCACAG 446 Query 10018 GCTGGTGCGCCAGTATTCCCGGAT 10041 |||||||| | |||||||||||| Sbjct 447 GCTGGTGCAACCGTATTCCCGGAT 470 >seq27244 Length=252 Score = 107 bits (118), Expect = 6e-19 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 47941 CCACAGTGTTTCAGGACCAGACCGTAACCGAATTCTGGACCGCTTT-AAATCTATTACTG 47999 ||||||| || | ||| | ||| | ||| || |||| ||||| ||| || | || | Sbjct 1 CCACAGTATTACCGGATCGGACAGAAACAAGGTTATGGAA-GCTTTCAAAGCTGTCACAG 59 Query 48000 GTGCTGATGCAATTCCGGTTAACCGTAAATATAAAGGTGCATGGAACGGACGTTTACCAG 48059 || ||| ||| | | ||||| |||||||||||||| ||||| || | ||||| | Sbjct 60 GTAACGATAACATTTCTTTCAACCGGAAATATAAAGGTGCGTGGAATGGTAGCTTACCGG 119 Query 48060 GCCGTATGACACTTGCTGCTAACAACATCCCGGCATTTGCTGATGACTCTGGTGCAATGG 48119 ||||||| || | ||||| |||||| | || | ||||| ||||| || ||||| |||| Sbjct 120 GCCGTATTACCATGGCTGCAAACAACGTACCATCGTTTGCGGATGATTCCGGTGCCATGG 179 Query 48120 CTAACCGTCTGCTGAT 48135 | |||||| |||| || Sbjct 180 CAAACCGTTTGCTTAT 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 168835955318822