Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_026610.2 Length=56637 Score E Sequences producing significant alignments: (Bits) Value seq107209 158 4e-34 seq84563 140 1e-28 seq49227 82.4 3e-11 >seq107209 Length=46261 Score = 158 bits (174), Expect = 4e-34 Identities = 237/334 (71%), Gaps = 2/334 (1%) Strand=Plus/Minus Query 20450 GGCCTGCTTGAGACTCCTGCTCGCGTTCGCAAGGCTTGGGAGTTCTGGTTCAAAGGCTAC 20509 ||||||| || || || || ||||| |||||| ||| || |||| | |||||| Sbjct 39798 GGCCTGCACGAAACGCCGGCGCGCGTGGCCAAGGCGTGGAAGCACTGGACCTCGGGCTAC 39739 Query 20510 CAACAAGATCCGGCTGCGCTGCTCAAAGTGTTCAAAGACGGGGCTGAGAAGTCTGACGAG 20569 || ||||||| | ||||||||| | ||| ||||||| || ||| ||| ||||| Sbjct 39738 GGCCAGGATCCGGTCGAGCTGCTCAAGGCTTTCGAAGACGGCGCCGAGGAGTACAACGAG 39679 Query 20570 ATGGTGGTGGTCAAGGATATTCCATTCTTCTCCCATTGCGAACACCATATCGCACCGATC 20629 || | || || | ||||| ||| | ||||||||| ||||| | || ||| || Sbjct 39678 TTGATCGTCGTGCGCGGCATTCCCGTCTACAGCCATTGCGAGCACCACCTGGCGCCGTTC 39619 Query 20630 ATTGGTCTGGCCACAGTAGCCTACATCCCGAACGGGAAGATCGTCGGCCTGTCCAAGATC 20689 | || |||||| | | ||| | ||||||||||| |||||||||||||||||| || Sbjct 39618 TTCGGCAAGGCCACCATCGGCTATCTGCCGAACGGGAAAATCGTCGGCCTGTCCAAGCTC 39559 Query 20690 ACGCGCTTGGTCGATGCCTTCGCCCGCCGCCTACAAGTGCAGGAGCGTTTGACCGAT-CA 20748 || ||| ||||||| ||||||| ||||| || || ||||| || ||| |||| || Sbjct 39558 ACCCGCCTGGTCGACTGCTTCGCCAAGCGCCTGCAGGTACAGGAACGCATGA-CGATCCA 39500 Query 20749 GATTGCGCAGACTATGGTGGACGAGCTGGAGCCG 20782 ||| || | | || |||| | ||| |||||| Sbjct 39499 GATCGCCAACGCGCTGATGGAAGTGCTTGAGCCG 39466 >seq84563 Length=11991 Score = 140 bits (154), Expect = 1e-28 Identities = 224/317 (71%), Gaps = 11/317 (3%) Strand=Plus/Plus Query 47583 TTAGTTAGCTCGTTCCATCCGATGAATGGGAACTCTTGGCCATGGTAGTTCCAGTAGTCA 47642 || || ||||||||||||||||||||||| |||| || || || || |||| |||||| Sbjct 6683 TTCGTAAGCTCGTTCCATCCGATGAATGGATACTCGTGACCGTGAAAGCTCCAATAGTCA 6742 Query 47643 TCCTCAGTCTTCAT---CTGACGGAATAGGAGCTCCTCGCCGGTATCCCAGACCCACTTG 47699 ||| | |||||| | ||||| || | |||||||| ||| ||| ||| ||| Sbjct 6743 TCC---GGCTTCATTGCCGTTCGGAAAAGCAATTCCTCGCCAGTAGGCCAACGCCATTTG 6799 Query 47700 AAGTCTTTACCGGATGCAAGGAAG-CGGCACTTCGGTCCTGCGATCTGAGGGAACCAGCG 47758 | | | | | || ||| | |||| ||| || || ||| |||||||| Sbjct 6800 TATGTAGAATTGCTTTCCAGAAAGACAGCACC---GTCTTG-GAACTGCATAAACCAGCG 6855 Query 47759 CTTAGACTTGTTTACCAAGTCATCCAAGTTCTTGTATTCGCGGTCGAAGATTACGCCGCG 47818 ||||| ||| | |||||||| || | | ||| || |||||||||||||| | ||| || Sbjct 6856 CTTAGCCTTAGTCACCAAGTCGTCAAGCTGCTTATACTCGCGGTCGAAGATAATGCCTCG 6915 Query 47819 CCAGAAGTGGCCGTAGCCGACGCCGACGTAGCGGCGAAAGAATAGGAGCTGAGCATCAGT 47878 |||||| | |||||||| | ||||||| || |||||| | ||||| | ||| || Sbjct 6916 CCAGAATGGACCGTAGCCAATACCGACGTTACGTCGAAAGCGCATAAGCTGGGTATCGGT 6975 Query 47879 CTTTCCTGGTCCGCGCG 47895 |||||| || || |||| Sbjct 6976 CTTTCCAGGACCACGCG 6992 >seq49227 Length=129 Score = 82.4 bits (90), Expect = 3e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 20597 TTCTCCCATTGCGAACACCATATCGCACCGATCATTGGTCTGGCCACAGTAGCCTACATC 20656 ||||| ||||||||||| ||||| | |||||||| || |||| || |||||||| Sbjct 129 TTCTCGCATTGCGAACATCATATGGTGCCGATCATCGGCAAGGCCCATGTCGCCTACATG 70 Query 20657 CCGAACGGGAAGATCGTCGGCCTGTCCAAGATCACGCGCTTGGTCGATGCCTTCGCCCGC 20716 || |||| ||| | ||||||| || |||||| | || | ||||| || || |||| Sbjct 69 CCCGACGGCAAGGTGCTCGGCCTTTCGAAGATCGCCCGGGTCGTCGAAATCTACGGCCGC 10 Query 20717 CGCCTACA 20724 ||||| || Sbjct 9 CGCCTGCA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180877633114838