Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq110395 93.3 4e-14 seq58313 84.2 2e-11 >seq110395 Length=10286 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | || | |||||||| | || || || || || || ||||||||| Sbjct 9984 TGCCGCCGCGAAGACGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 9925 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | ||| |||| |||||||| || |||||| | || |||||||||||||| || | Sbjct 9924 AGAGGGTACGCCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCGGGGG 9865 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || ||||| ||| ||| || | | | || | || || | | ||| | Sbjct 9864 GGATGCCTTCCTTATCCTGGATTTTGGCCTTAACGTTGTCGATGGTATCGGACGATTCGA 9805 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | || || || || || || || ||||| ||||| Sbjct 9804 CCTCGAGGGTGATCGTCTTCCCAGTAAGCGTCTTAACGAAGATCTGCAT 9756 >seq58313 Length=1260 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 108261 GTACTCGCCGACGCGTCTTTCGAAAAAGTTGGTTTTGCCTTCTAGCGAAATCATGTTCAT 108320 ||| ||||| |||||| | || ||||||||||||||||| | |||||| ||||| | ||| Sbjct 613 GTAATCGCCCACGCGTTTCTCAAAAAAGTTGGTTTTGCCCTGTAGCGATATCATCTCCAT 554 Query 108321 AAAATGAAAGGGATTAGGTG---TGTAATAGTATTTGGAGTATTTGAGATTAGTGAGCAA 108377 ||||| ||| ||||| | || || ||| | || ||| || || | ||| | Sbjct 553 AAAATCAAACGGATTTGATGCACCGT-ATACT-TTCGGA-TAGCCCAGTTCGCCCAGCCA 497 Query 108378 CCAATCGGCCACAAACTCTATATAACTG-CACATCAAGTGCGAATTCATGCCCAACAGCG 108436 | ||||| |||||||| |||| |||| | ||||| | | ||||| || | | || Sbjct 496 TCTGTCGGCTACAAACTCAATAT-ACTGACTCATCAGTTTGGCGTTCATACCTATTAACG 438 Query 108437 CCACGGGTATTGCGTTAGTGAAAAAGtttttttCAATCTCGACCGCTTCCTT 108488 || || | |||| ||| ||| | ||||| ||||| ||||| || || Sbjct 437 ATACCGGCAGCGCGTCGCTGATAAATTCCTTTTCTATCTCTACCGCGTCTTT 386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424358502475512