Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq109776 109 7e-19 seq110268 95.1 1e-14 seq92997 86.0 8e-12 seq93000 84.2 3e-11 >seq109776 Length=48066 Score = 109 bits (120), Expect = 7e-19 Identities = 332/506 (66%), Gaps = 13/506 (3%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| ||| |||||| ||||| || || || || ||||||||||| |||||| Sbjct 3927 CCTTCGTCTCGGCTGATGAGCTCATTGGAAAATGTCAAGCCGGGCATGAGACCGCGCTTC 3986 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 |||| ||| ||||| || || || || ||||||||||||||||| || || || Sbjct 3987 TTCAGCCAAAAAATGGCCGCGAAAGAACCGGAGAAGAAGATCCCCTCAACCGCAGCAAAA 4046 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---AAACCACTTCATCGCCCAC 130210 || | ||| ||||||||||| || | ||| | || || ||| | ||||| Sbjct 4047 GCGATGAGGCGCTCAGCAAACGA---AGTCTTCTTGTCCGAAATCCAGCGAAGAGCCCAT 4103 Query 130211 TGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCT 130270 | || || || || ||| || | ||||| || || || || || | | ||| Sbjct 4104 TCTGCTTTGCGCTTGACACAGGGAATGGTCTCGACAGCGTCGAAAAGGTATTCACGTTCA 4163 Query 130271 GATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCAT-TTC 130329 | || ||||| ||||| |||| ||||| || || || ||| || | | | | Sbjct 4164 GCAGGGTCTTTAATGTAAGTATCAATGAGAAGCGAGTAGGTCTCGGAGTGAATGTTCTCC 4223 Query 130330 ATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTC-GCTTATCTGTACCTCATCTGCAA 130388 || || | ||| | ||||||| |||| || || || | || ||||||| | | Sbjct 4224 ATCAT-GATTTGAAAACCGTAGAAGCAGCGAGCCTCTGCGGCT-TGGACCTCATTCGAGA 4281 Query 130389 AATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATAT 130448 | | || ||||| || || ||||| || | ||||| || || |||| || Sbjct 4282 AGCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCTGCAAAGAAAGCGAGGACAT 4341 Query 130449 ACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGATCCTTCG 130505 ||||| | | || || ||||| | || |||||||||| | | |||||| | Sbjct 4342 GAGAGATGAAATGACGCTCGTTGTCGTTGAGGCGGTTCTTCCAGTCATGTAAATCCTTTG 4401 Query 130506 AGAGATCTACCTCCTCCGCAGTCCAA 130531 |||| || | |||||| ||||||||| Sbjct 4402 AGAGGTCCATCTCCTCTGCAGTCCAA 4427 >seq110268 Length=37665 Score = 95.1 bits (104), Expect = 1e-14 Identities = 182/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 179857 TAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGA-GATCATTGAA-CTCTTGGTTTG 179914 |||||||| || || || |||| ||||||||||| | || |||| ||||| |||| Sbjct 13105 TAATCCTTGTTGTGCTGGAGTCCCATGATCTTCTTGATGTTC--TGAATCTCTTCGTTTT 13162 Query 179915 ATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACA 179974 ||| ||| | || ||||| ||||| | || || || || ||||| | Sbjct 13163 TCATGATTTGATCATGCTTCGCGTCTCGCACATTCAGAGGTTTGCCGCGCAGCGGGAAAA 13222 Query 179975 CACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAAT 180034 ||||| ||| || ||||| || ||| |||||||| || ||||| | ||| || || | Sbjct 13223 CACCGAAGTTGTCTCGACCGACAACACCAAGACCAGCGACAGCGAGAGCCTTGGCAGAGT 13282 Query 180035 CACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCTGCCTTGTTCGCGT 180094 | || || |||| ||||| || || | | | ||| |||||| || |||||||||| Sbjct 13283 CGCCTTCAGTCAGAATGAGGGTGCATTGATCTGCGTGTTTCGTCCCAGCGTTGTTCGCGT 13342 Query 180095 CGTCCAACTTGGGAATACCAGTAAT 180119 || || ||||| | ||||| || Sbjct 13343 CGCACAGCTTGGCTAACCCAGTGAT 13367 >seq92997 Length=357 Score = 86.0 bits (94), Expect = 8e-12 Identities = 181/264 (69%), Gaps = 12/264 (5%) Strand=Plus/Minus Query 14005 GTGGACACCCAAAATCTTCTCGCGACCGCGCACA-CTGGGTAGGGACACGGTGATCTTAC 14063 |||||| | | |||||||||||||||| || | |||| || ||| || || || Sbjct 262 GTGGACGCGGATGATCTTCTCGCGACCGCCGACGTCCGGGTTCGG-CACCACGACCTGAC 204 Query 14064 GATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCG 14123 | || ||||| || || || || ||||| ||| || | || ||||| || || | Sbjct 203 GGTCGAAGCGGCCCGGACGCAGCAGGGCCGGGTCCAGCACGTCGGGACGGTTGGTGGCGG 144 Query 14124 CGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGAT 14180 |||| | | |||||| ||||| || ||||| |||||||| || ||||| | Sbjct 143 CGATCAGGATGATGCCT---TCGTTGGCCTCGAAGCCGTCCATCTCGACCAGCAGTTGGT 87 Query 14181 TGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACC 14238 ||| ||| || ||||| || || || | || ||| || || | ||| || ||| Sbjct 86 TGAGGGTCTGCTCGCGCTCGTCGTTGCC--GCCGCCCAGGCCGGCGCCGCGATGGCGACC 29 Query 14239 GACGGCGTCAATTTCATCGATGAA 14262 ||||||||| ||||| |||||||| Sbjct 28 GACGGCGTCGATTTCGTCGATGAA 5 >seq93000 Length=585 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || || ||||| || ||||| || ||||| ||| ||||| || ||| || || ||| Sbjct 204 CGGTCGAAGCGGCCCGGGCGCAGCAGGGCCGGGTCCAGGATGTCGGGGCGATTGGTGGCC 145 Query 14123 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 14182 |||||||| | || |||| | | | |||||||| |||||||| || | || || Sbjct 144 GCGATGACGATGACGCCCAGGTTGGTGTCAAAGCCGTCCATCTCGACCAGCATCTGGTTC 85 Query 14183 ATGGTTTGTTCGCGTTCATCATT--CGCAG-GCATACCACCCGCACTGCGTTGCTTACCG 14239 | || |||||||| || || || ||| | || |||| || | || || ||| Sbjct 84 AGCGTCTGTTCGCGCTCGTCGTTGCCGCCGCCCAGACCA---GCGCCACGATGGCGGCCG 28 Query 14240 ACGGCGTCAATTTCATCGATGAA 14262 |||||||| ||||| |||||||| Sbjct 27 ACGGCGTCGATTTCGTCGATGAA 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617575567341560