Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq108672 131 6e-26 seq14176 116 1e-21 seq94417 102 3e-17 seq17923 95.1 5e-15 >seq108672 Length=10797 Score = 131 bits (144), Expect = 6e-26 Identities = 291/423 (69%), Gaps = 18/423 (4%) Strand=Plus/Plus Query 5842 GGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCAT--CCACCACGGCCTGCGCCTGCTGG 5899 ||||| || || || || ||||||||||||||| | || | ||| ||| ||||| Sbjct 3529 GGCCCGGCCGGCACCGGCAAGACCTTCCTGGCCGTGGCCTGCGCGGTGGACGC--GCTGG 3586 Query 5900 AGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGAAGC 5959 || | | | |||||| || || | || || || ||||||||||| | || | Sbjct 3587 AGCGCTCGACCGTGCAGCGCATCATCCTGACGCGCCCAGCCGTTGAGGCCGGCGAACGCC 3646 Query 5960 TCGGCTTCCTGCCCGGCACTGTGGACG-AGAAGATGGCACCCTACCTCACCCCGATGCTG 6018 ||||||||||||||||| || ||| ||||| | | ||||| || |||| | Sbjct 3647 TCGGCTTCCTGCCCGGCGACCTG-ACGCAGAAGGTCGACCCCTATCTGCGCCCGCTCTAC 3705 Query 6019 GACGCGGTGATCGACCTGGTCGGCC-CGACGATG--ACGAAGCGCCTCCTCGAGTCGCGC 6075 ||||| | |||||| | ||| |||| | || ||| || | ||||| | || Sbjct 3706 GACGCCCTCTACGACCTTTTGGGCTTCGACCGCGTCACCAAG-GCGT--TCGAGAAGGGC 3762 Query 6076 CAGCTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGACGTTCAACGACACGTACATC 6135 ||||| ||||| || |||||||||| |||||| ||||| ||| | ||| || | | | || Sbjct 3763 CAGCTCGAGGTTGCGCCGCTGGCCTTCATGCGCGGCCGCACGCTGAACCACGCCTTCGTC 3822 Query 6136 GTCGCTGACGAGATGCAGAACGCCAC-CCCGCGCCAGACCGCGCTGCTGGTGACCCGCCT 6194 || |||||| ||||||| | || |||| || ||| | || | |||||||||| Sbjct 3823 ATCCTCGACGAGGCGCAGAACACGACGCCCGAGC-AGATGAAGATGTTCCTGACCCGCCT 3881 Query 6195 GGGCTTCGG--GACGAAGGCCGTCCTGAACGGTGACCCGGCCCAGTGCGACCTGCCGCCC 6252 ||||||||| | || | |||| | | ||| ||| | |||| ||||||||||| | Sbjct 3882 GGGCTTCGGCAGCCGCTG--CGTCGTCACCGGCGACACCAGCCAGATCGACCTGCCGCGC 3939 Query 6253 GGC 6255 ||| Sbjct 3940 GGC 3942 >seq14176 Length=1367 Score = 116 bits (128), Expect = 1e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 32679 AAGGCGAAGCTCCTGATCGTGGACGAGTCCTCCATGGTGGACGAGCAGGTGGGAGAAGAC 32738 ||||||| ||| | || | ||||| | ||| |||||||||||| | | || | ||| Sbjct 884 AAGGCGAGCCTCATCGTCATCGACGAATGCTCGATGGTGGACGAGGATCTCGGCAAGGAC 825 Query 32739 CTGCTGTCCTTCGGGGTGCCGATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCCGTC 32798 |||||||| ||||| | || |||| || ||||| ||||||||||||||||| ||| Sbjct 824 CTGCTGTCGTTCGGCAAGAAGACGCTCGTGCTCGGCGATCCCGCCCAGCTGCCGCCGGTC 765 Query 32799 ATGGGGGCCGGGTTCTTCACCAAGCAGAAGGCCGACTTCCTCCTGACCGACATCCACCGA 32858 | ||| | ||| ||||||||| || || | ||| | | ||||| | | || || Sbjct 764 AAGGGTGGCGGCTTCTTCACCGAGGCCGAGCCGGACGTGATGCTGACGCAGGTGCATCGC 705 Query 32859 CAGGCCCGCGACAACCCGATCATCGAGATGTC 32890 |||||| |||||| |||||| || ||||| Sbjct 704 CAGGCCGCCGACAATCCGATCGTCCGCATGTC 673 >seq94417 Length=2209 Score = 102 bits (112), Expect = 3e-17 Identities = 290/438 (66%), Gaps = 16/438 (4%) Strand=Plus/Plus Query 5819 AGTACGACCTGACCGTCTCCACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCAT-- 5876 || ||||| | ||| || || |||||| || || || || ||||||| ||||||| | Sbjct 560 AGCACGACATCACCTTCGGCATCGGCCCGGCCGGCACCGGCAAGACCTACCTGGCCGTGG 619 Query 5877 CCACCACGGCCTGCGCCTGCTGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCC 5936 || ||| ||| ||||||| | | | | | |||||| |||| | ||||| || Sbjct 620 CCTGTGCGGTGGACGC--GCTGGAGCGCAGCGCGGTGCAGCGCATCGTGCTGACCCGTCC 677 Query 5937 CGCCGTTGAGGCAGATGAGAAGCTCGGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGC 5996 || || || || | || || ||||| || || ||| || || ||||||| | Sbjct 678 GGCGGTGGAAGCCGGCGAACGCCTGGGCTTTCTACCTGGCGACCTGAACCAGAAGATCGA 737 Query 5997 ACCCTACCTCACCCCGATGCTGGACGCGGTGATCGACCTGGTCGGCCCGACGATGACG-- 6054 || || || |||| || |||||| || ||| ||| | || ||| || | | Sbjct 738 CCCGTATCTGCGCCCGCTGTACGACGCGCTGTACGAGCTGATGGGGCCGGAGAAGGTGCA 797 Query 6055 AAGCGCCTCCTCGAGTCGCGCCA---GCTGGAGGTCGCCCCGCTGGCCTACATGCGAGGC 6111 || |||| | ||| ||| | |||||| || ||||||||||||| |||||| || Sbjct 798 AAAGGCCT--TTGAG---CGCAATGCGCTGGAAGTGGCCCCGCTGGCCTTCATGCGCGGG 852 Query 6112 CGGACGTTCAACGACACGTACATCGTCGCTGACGAGATGCAGAACGCCAC-CCCGCGCCA 6170 || ||| | ||| || | | | || || ||||| ||||||| |||| |||| | || Sbjct 853 CGCACGCTGAACAACGCCTTCGTCATCCTGGACGAAGCGCAGAACACCACGCCCGAG-CA 911 Query 6171 GACCGCGCTGCTGGTGACCCGCCTGGGCTTCGGGACGAAGGCCGTCCTGAACGGTGACCC 6230 || | || | |||||||| | ||||| || | || || || ||| ||| ||| Sbjct 912 GATGAAGATGTTTCTGACCCGCATCGGCTTTGGCGCCAAAGCGGTGGTGACCGGCGACGT 971 Query 6231 GGCCCAGTGCGACCTGCC 6248 |||| ||||||||| Sbjct 972 AAGCCAGATCGACCTGCC 989 >seq17923 Length=176 Score = 95.1 bits (104), Expect = 5e-15 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 32769 CTGGGCGACCCCGCCCAGCTGCCGCCCGTCATGGGGGCCGGGTTCTTCACCAAGCAGAAG 32828 || ||||| |||| |||||||||||| |||| ||| | ||| | |||||||| ||| | Sbjct 4 CTTGGCGATCCCGGCCAGCTGCCGCCGGTCACGGGCGGCGGTTATTTCACCAATCAGGAT 63 Query 32829 GCCGACTTCCTCCTGACCGACATCCACCGACAGGCCCGCGACAACCCGATCATCGAG 32885 |||| | ||| ||||| || ||||| || ||||| || ||||| ||||| ||| || Sbjct 64 CCCGATTACCTGCTGACGGATATCCATCGCCAGGCGCGGGACAATCCGATTATCAAG 120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191235137822080