Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq108213 199 1e-46 seq56696 145 2e-30 seq37734 129 2e-25 seq108967 122 3e-23 seq83405 95.1 4e-15 seq67610 91.5 5e-14 seq2779 91.5 5e-14 >seq108213 Length=2622 Score = 199 bits (220), Expect = 1e-46 Identities = 273/378 (72%), Gaps = 10/378 (3%) Strand=Plus/Minus Query 40043 TCCAGCACGCGGGCCGCGTCCTTCATCGCG---TTGCGCGCCTTGATCCGGCCGAAGGTC 40099 || ||||||||| | |||| |||||| ||| |||| ||| |||||||| Sbjct 1850 TCGAGCACGCGGCCGACGTCGCGGATCGCGCCCTTGGCCGCC---ATCGTACCGAAGGTG 1794 Query 40100 CCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCG 40159 ||||||| | |||| ||| |||||| || | |||| | |||| || | || Sbjct 1793 GCGATCTGCGAGACCGCGTCCTTGCCGTACAAATCCTTCACGTGCTGGATCACGCGGTCG 1734 Query 40160 CGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCA 40217 || | || | || |||||||||||| | ||||||||| |||||||| ||||| || | Sbjct 1733 CGCCCTTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATCGACACGCGTTCGGGATTGA 1676 Query 40218 GGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGT 40277 |||| |||||||| | || || || || |||||||||||||||||| || ||| Sbjct 1675 GGAAGCGCTCGAACAGCAGATTGTACTGGAGCGGATCGAGGTCGGTGATCAGCAGCGAGT 1616 Query 40278 AGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCT 40337 |||| |||||||||||||| |||| || || || || || ||| ||| || ||||||| Sbjct 1615 AGGCCACCAGCGAACCGGCGCCCGAACCACGGCCCGGCCCCACCGGCACACCATTCTCCT 1556 Query 40338 TGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGA 40397 ||||||| |||||| ||||| |||| |||||||||| ||||| ||| | || Sbjct 1555 TGGCCCACTTGATGAATTCGGCCACGATCAGGAAGTAGCCGGGGAATTTCATATTACAGA 1496 Query 40398 TCATGTCGATCTCGTACT 40415 || ||||| ||||| ||| Sbjct 1495 TCGTGTCGGTCTCGAACT 1478 Score = 89.7 bits (98), Expect = 2e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 39232 CTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGAT 39291 |||||||||||| || || ||||||| |||||| |||||| |||||| ||| ||| Sbjct 2622 CTTCTTGCCCATCGCGCGGCGCAGCATGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGAT 2563 Query 39292 CTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGTC 39340 ||||||| || | |||||||||||| |||| |||| ||||| ||| Sbjct 2562 CTGCGCCATCTGCATCACCTGCTCCTGATAGACCATGATGCCGTAGGTC 2514 >seq56696 Length=1533 Score = 145 bits (160), Expect = 2e-30 Identities = 174/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 40192 GGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGG 40251 |||||||||||| ||||| |||||||||||||| ||||| | | | || || ||| || Sbjct 1533 GGGCATGGACACCCGCTCCGGGTTCAGGAACCGTTCGAACAGCAACTTGTACTGCAGCGG 1474 Query 40252 ATCGAGGTCGGTGATCCCGAG-GCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCC 40310 || |||||||| ||| || ||| || || |||||||||||||| | ||||| || | Sbjct 1473 GTCCAGGTCGGTAATCTTCAGCGCA-TAAGCCACCAGCGAACCGGCACCAGAGCCCCGGC 1415 Query 40311 CAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGA 40370 | || || ||| ||| || |||||||||| ||||||||| | |||| || || Sbjct 1414 CTGGCCCCACCGGGCAGCCATTGAGCTTGGCCCAGTTGATGAAGTCCCCCACGATCAAGA 1355 Query 40371 AGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCT 40424 ||||| |||||||||||||| | ||| || ||||||| | | ||| ||| Sbjct 1354 AGTAGCCCGGGAAGCCCATCTTCAGGATGGTGGTGATCTCGAATTCCAGCCGCT 1301 >seq37734 Length=186 Score = 129 bits (142), Expect = 2e-25 Identities = 141/185 (76%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 40192 GGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGG 40251 |||||||||||| ||||| ||||||||||| ||||| || | || || ||| || Sbjct 1 GGGCATGGACACCCGCTCCGGGTTCAGGAAGCGCTCAAACAGCAGGTTGTAGCGCAGCGG 60 Query 40252 ATCGAGGTCGGTGATCCCGAG-GCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCC 40310 || ||||| |||||| || ||| |||||||||||||| ||||| | ||||| || | Sbjct 61 GTCCAGGTCCGTGATCAGCAGCGCA-TAGGCGACCAGCGAGCCGGCACCGGAGCCCCGGC 119 Query 40311 CAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGA 40370 | || ||||| |||||| |||||||||||| ||||||||| | |||| ||||| Sbjct 120 CCGGGCCGACAGGGCAGCCGTTTGCCTTGGCCCAGCGGATGAAGTCCGACACGATCAGGA 179 Query 40371 AGTAG 40375 ||||| Sbjct 180 AGTAG 184 >seq108967 Length=4619 Score = 122 bits (134), Expect = 3e-23 Identities = 234/343 (68%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 40035 AGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGGCCGA 40094 ||||| | | || |||||| | |||| || | || |||||||| || | |||| Sbjct 4279 AGGGCATCTGCAAAACGCGGCCGACGTCGCGCAGCACGGCGCGCGCCTGGAGCGTTCCGA 4338 Query 40095 AGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCT 40154 | || |||||| || |||| ||| || || || || |||||| || || |||| Sbjct 4339 AAGTAATGATCTGCGCAACCTGATCGCGGCCATATTTTTCCTGGACGTAGCGAATAACCT 4398 Query 40155 CGCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGG 40212 || |||| || || | || ||| ||||| || | || ||||| ||||||||||| || Sbjct 4399 CGTCGCGCCGGTCCTGGCA--GAAATCGATATCGAAATCCGGCATCGACACGCGCTCCGG 4456 Query 40213 GTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAG 40272 ||||||||| |||||||| | ||| | | || ||||| || |||||||| || Sbjct 4457 GTTCAGGAAGCGCTCGAACAGAAGCGCAAACCGGAGCGGATCCAGATCGGTGATGGTCAG 4516 Query 40273 GCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTT 40332 |||| | | ||| || || |||| || || || || || || | |||| Sbjct 4517 CGCCCAGGCCGCGACCGAGCCCGCACCCGACCCACGTCCCGGTCCAACAGGAATGCCGCG 4576 Query 40333 CTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAG 40375 | |||| ||||| ||||||||| | |||| |||||||||| Sbjct 4577 CGCCTTCGCCCATTTGATGAAGTCCGACACGATCAGGAAGTAG 4619 >seq83405 Length=280 Score = 95.1 bits (104), Expect = 4e-15 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 39232 CTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGAT 39291 |||||||||||| || || ||||||| ||| || ||||| ||||||||| | || | Sbjct 280 CTTCTTGCCCATCGCGCGGCGCAGCATGTCCGCGCCGCCCAAGCTGTAGCCGCCCAGCAC 221 Query 39292 CTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGTCGGGTCCAG 39348 ||| ||||||| | ||||||||||||||||| || || ||||| ||| ||||| Sbjct 220 CTGGGCCGCCTGCATCACCTGCTCCTGGTAGACGAAGACGCCGTAGGTCTCCTCCAG 164 >seq67610 Length=141 Score = 91.5 bits (100), Expect = 5e-14 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 39229 CTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAG 39288 ||||||||| ||||| || || ||||| |||||||||| || ||||||||||| || || Sbjct 42 CTTCTTCTTACCCATCGCGCGGCGCAGAAGGTCGGCCTCACCGAGGCTGTAGCCCGCCAG 101 Query 39289 GATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATG 39328 |||||| || || | |||||| ||||| |||| |||| Sbjct 102 GATCTGGGCGATCTGCATCACCTGTTCCTGATAGACGATG 141 >seq2779 Length=230 Score = 91.5 bits (100), Expect = 5e-14 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 39195 GGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCA 39254 |||| ||| || | || ||||| |||||| ||||||||| |||||||| || |||| Sbjct 91 GGAACTTCTCGCGGTGCTCGGCCATTTCCTCGGCCTTCTTCTTACCCATGGCGCGGCGCA 150 Query 39255 GCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCT 39314 || ||| || ||| || |||||| | ||||||||||| | || | |||||||| Sbjct 151 ACATGTCCGCGCCGCCGAGCGAGTAGCCGCCCAGGATCTGCGCGGTCTGCATCACCTGCT 210 Query 39315 CCTGGTAGATGATGA 39329 ||||||||| |||| Sbjct 211 CCTGGTAGACCATGA 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160194581443974