Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_028879.1 Length=43225 Score E Sequences producing significant alignments: (Bits) Value seq39177 87.8 5e-13 seq75994 86.0 2e-12 seq92742 84.2 6e-12 >seq39177 Length=30950 Score = 87.8 bits (96), Expect = 5e-13 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 31251 TTTTGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTTA 31310 |||||| || | ||| ||| |||||||| |||||| ||||||||||||||| ||||||| Sbjct 7603 TTTTGGATGGGGCGGAAGGGATCGAACCTTCGAATGGCGGAATCAAAATCCGCTGCCTTA 7544 Query 31311 CCGCTTGGCGACG 31323 ||||||||| ||| Sbjct 7543 CCGCTTGGCTACG 7531 >seq75994 Length=328 Score = 86.0 bits (94), Expect = 2e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 31253 TTGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTTACC 31312 ||||||| | ||| ||||||||||||| |||||| ||| | ||||| ||| ||||||||| Sbjct 277 TTGGCTGGGGCGGGAGGATTCGAACCTCCGAATGGCGGTACCAAAAACCGCTGCCTTACC 218 Query 31313 GCTTGGCGACGGCGCAA 31329 |||||||||| | ||| Sbjct 217 ACTTGGCGACGCCCCAA 201 >seq92742 Length=6105 Score = 84.2 bits (92), Expect = 6e-12 Identities = 123/167 (74%), Gaps = 8/167 (5%) Strand=Plus/Minus Query 11661 TGTTCGGTTACGTGTCCGAAGCGAACGTTTCGATTAACAACAACGTTTCGCCGAACAAGG 11720 |||||| |||| | ||||| || | |||| ||||||||||| ||||| ||||||| Sbjct 4641 TGTTCGCTTACCTCACCGAACTCAAGATGACGATCAACAACAACGTGTCGCCCAACAAGG 4582 Query 11721 CCGT--CGGTATCTTGGGCGCGTTCGACACGACGGCGGGTAACTTCGAAGTCGGCGGTTC 11778 |||| |||| |||| ||||| |||||| |||||| |||| || ||||| | | | | Sbjct 4581 CCGTTGCGGT-TCTT-GGCGCCTTCGACGTGACGGCAGGTATTTTTGAAGT-GTCTG-CC 4526 Query 11779 GA--TTACCGCTTACTTTACGACCGTCGCAGCGGTGAAGGCGGTTCG 11823 || | |||||||||| || |||| ||| || |||| ||||| Sbjct 4525 GAAGCTGAGGCTTACTTTAGCACAGTCGAAGCTGTCCAGGCCGTTCG 4479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138015907371694