Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_028910.1 Length=55617 Score E Sequences producing significant alignments: (Bits) Value seq109371 194 6e-45 seq69633 107 7e-19 >seq109371 Length=32687 Score = 194 bits (214), Expect = 6e-45 Identities = 379/557 (68%), Gaps = 5/557 (1%) Strand=Plus/Plus Query 42637 GTCAACAACGACTGCGTACTCGAAACCGAGAGAATGGCAGACGATTCGGTGGATCTGATT 42696 |||||| |||||||||| | || ||| | | ||||| ||| || | ||| | Sbjct 22914 GTCAACGACGACTGCGTGCAGGAGACCCGGCGCATGGCGTCCGACAGCGTCGGCCTGGTC 22973 Query 42697 GTCACCAGTATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGACTTCGGC 42756 | ||||| || || ||| || || ||||||||| |||||| || | ||||||||| Sbjct 22974 CTGACCAGCATCCCCTTCAGCACGCAGTACGAGTACTCGCCGAACTTCGCCGACTTCGGG 23033 Query 42757 CACACCGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCAGCTGCTG 42816 |||||||| ||||| ||| |||| ||||||||||||||| ||| |||||||| Sbjct 23034 CACACCGATAGCAACGAGCACTTCTTCCAGCAGATGGACTACCTGGTGCCGGAGCTGCTG 23093 Query 42817 CGCATCCTCGCGCCCGGGCGGATCTACGCCTGCCACGTCAAGGACCGCATCTT---GTTC 42873 ||| | || ||| || || | || |||||||||| |||||||| | | | Sbjct 23094 CGCGTGCTGATGCCAGGCAGGGTGGCGGCGATCCACGTCAAGAACCGCATCGTGCCGAGC 23153 Query 42874 GGCAACGTCACCGGCGCCGGCGTGCCCACCGTGTCCCCGTTCCACGCCGAGGCGATCTTC 42933 |||| ||| |||| ||| | | |||| || ||||||| || || || | | Sbjct 23154 GGCATGGTCGAGGGCGTTGGCTTCCAGACCGAGTACCCGTTCGACATGGACACGCTGGCC 23213 Query 42934 CACGGCCGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCGTAACCGATGTGGTG 42993 | ||| ||||||||| ||||| ||||| | || || | || || ||||| Sbjct 23214 TGCTTTCGCCGGCACGGCTTCCACTACATCGGCCGCAAGCCCATCATCACGGACGTGGTC 23273 Query 42994 CGGGAAAACAACCAGACGTACCGGCTGGGCTGGTCAGAGCAGTGCAAAGACGCCACCAAG 43053 ||||| ||||||||||| ||| ||||||||||| ||||| ||||| |||| | | Sbjct 23274 CGGGAGAACAACCAGACCTACAGGCTGGGCTGGAGCGAGCAATGCAAGGACGGTAGCCGC 23333 Query 43054 ATGGGGGTCGGCTCCCCGGAATACGTTCTGCTGTTCCATAAACCGCAGACAGACAGGTCG 43113 ||||| ||||| || ||| | ||||| |||| || ||| ||| ||| | | | Sbjct 23334 ATGGGCTTCGGCCTGTGCGAGTACCTGCTGCTCTTCCGCAAGGCGCCGACCGAC-GCTAG 23392 Query 43114 AAG-GGATACGCCGACACACCCGTCGCCAAATCCAAGGACGACTACACCCGGGCACGTTG 43172 | || || |||||| ||| ||| ||| ||||| ||| ||| |||| | || || Sbjct 23393 CCGTGGCTATGCCGACCTACCGGTCTTCAAGGACAAGGCCGAGTACTCCCGCCCGCGCTG 23452 Query 43173 GCAGGTGGACGCGCACG 43189 |||| | || || |||| Sbjct 23453 GCAGCTCGATGCCCACG 23469 Score = 104 bits (114), Expect = 8e-18 Identities = 283/419 (68%), Gaps = 21/419 (5%) Strand=Plus/Plus Query 41269 CCGGGCGAGATTCACTCGATGTTGTTGCCGCACCAG--CGCGATCTGGTGCGTTGGGCGG 41326 |||| |||||| || || ||||| | ||||||| |||| | || ||||| Sbjct 21510 CCGGCCGAGATCAACCCGCTGTTGAAGTTGCACCAGATCGCGGCC--GTCATCTGGGCAA 21567 Query 41327 TC-GCCGGGGGTAGGCGCGCGATCTTCGCGGCGTTCGGCCTGGGCAAGACCGTGATGCAG 41385 || ||| || | ||| ||| | ||| ||| ||||||||||||||||| | |||| Sbjct 21568 TCCGCCTCGGCTGTGCG-GCGCTGTTCATGGCCTTCGGCCTGGGCAAGACGTTCGTGCAA 21626 Query 41386 CTGGAGATCGTGCGCCT-GT-CGCTAGCCAAGCATGGCGGTGGTAAAGGTCTGATCGTGA 41443 |||||||||||||| | || ||| || |||| |||||| | || |||||||| | Sbjct 21627 CTGGAGATCGTGCGGATCGTCCGCGCGC---GCAT--CGGTGGCATGGGCCTGATCGTCA 21681 Query 41444 TGCCGCTGGGCGTGCGGATCGAGTTCGCCCACGACGCCCAAATGCTAGGCATCGAAACCC 41503 | || ||| || || ||||||| | |||||| | ||| |||||| | | Sbjct 21682 TCCCACTGTCGGTCCGCCAGGAGTTCGTGCGCGACGCGGCGAAGCTGGGCATCAAGGTCA 21741 Query 41504 GGTTCGTTCGCCGTACAGACGA---AGTCGGCGGCGACGGAATCTATCTCACCAACTATG 41560 |||| | ||| | ||||| | || | || || ||||| ||||||||||| | Sbjct 21742 AGTTCATCCGCACCATCGACGAGGCTGACGACCCCGCGGGCATCTACCTCACCAACTACG 21801 Query 41561 AGAGTGTCCGCGACGGAAAGTTGGACCCGACACTGTTCACGGCCGTCTCACTCGATGAGG 41620 || || || ||||| ||| ||||||||| ||||||| | | | || || |||| Sbjct 21802 AGTCGGTGCGGGACGGCAAGCTGGACCCGATGCTGTTCAGCGTGGCCAGCCTGGACGAGG 21861 Query 41621 CGAGCGTG-CTGCG-GTCTTT--CGGGTCCAAGACCTACCAGTCGTTCCTAGAGCTGTT 41675 || || || ||||| | |||| ||| |||||||| || |||| | | |||||| Sbjct 21862 CG-GCTTGCCTGCGTGGCTTTGGCGGCAGCAAGACCTTCCGCGAGTTCATGGCGCTGTT 21919 >seq69633 Length=120 Score = 107 bits (118), Expect = 7e-19 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 42762 CGACGACAACGCGCATTTCTGGGCGCAGATGGACTACCTCACACCGCAGCTGCTGCGCAT 42821 ||| || |||| ||||||||||| ||||||||| | ||| | ||||||||||||||||| Sbjct 120 CGATGATAACGAGCATTTCTGGGAGCAGATGGATTTCCTGATCCCGCAGCTGCTGCGCAT 61 Query 42822 CCTCGCGCCCGGGCGGATCTACGCCTGCCACGTCAAGGACCGCATCTTG 42870 || ||||||||||||||| ||| ||| || ||||| |||||| || Sbjct 60 TCTGGCGCCCGGGCGGATCGCGGCCATCCATGTGAAGGATCGCATCGTG 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 177617943265598