Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_028946.1 Length=59652 Score E Sequences producing significant alignments: (Bits) Value seq109371 230 9e-56 seq69633 91.5 6e-14 >seq109371 Length=32687 Score = 230 bits (254), Expect = 9e-56 Identities = 386/555 (70%), Gaps = 5/555 (1%) Strand=Plus/Plus Query 45568 CAACAACGACTGCGTTCACGAAACCAAGAGCATGGCAGACGATTCGGTGGATCTGATTGT 45627 |||| |||||||||| || || ||| | ||||||| ||| || | ||| | | Sbjct 22916 CAACGACGACTGCGTGCAGGAGACCCGGCGCATGGCGTCCGACAGCGTCGGCCTGGTCCT 22975 Query 45628 CACCAGCATTCCGTTCTCCAACCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCA 45687 |||||||| || ||| || || ||||||||| |||||| || | ||||||||| || Sbjct 22976 GACCAGCATCCCCTTCAGCACGCAGTACGAGTACTCGCCGAACTTCGCCGACTTCGGGCA 23035 Query 45688 CACCGACGACAACGAGCACTTCTGGCAGCAGATGGACTACCTCACACCGCAGCTGCTGCG 45747 |||||| |||||||||||||| ||||||||||||||||| ||| |||||||||| Sbjct 23036 CACCGATAGCAACGAGCACTTCTTCCAGCAGATGGACTACCTGGTGCCGGAGCTGCTGCG 23095 Query 45748 CATCCTCTCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTT---GTTCGG 45804 | | || ||| ||| | | || |||||||||| |||||||| | | ||| Sbjct 23096 CGTGCTGATGCCAGGCAGGGTGGCGGCGATCCACGTCAAGAACCGCATCGTGCCGAGCGG 23155 Query 45805 AAACGTCACCGGCGCCGGCGTGCCCACGGTGTCCCCGTTCCACGCCGAGGCGATCTTCCA 45864 | ||| |||| ||| | | || | || ||||||| || || || | | Sbjct 23156 CATGGTCGAGGGCGTTGGCTTCCAGACCGAGTACCCGTTCGACATGGACACGCTGGCCTG 23215 Query 45865 CGGACGCAAACACGGCTTCGACTACCTCGGCATGATCACCGTCGTCACCGATGTGGTCCG 45924 | ||| ||||||||| ||||| ||||| | || || |||| || |||||||| Sbjct 23216 CTTTCGCCGGCACGGCTTCCACTACATCGGCCGCAAGCCCATCATCACGGACGTGGTCCG 23275 Query 45925 GGAAAACAACCAGACGTACCGGCTGGGCTGGTCCGAGCAGTGCAAAGACGCCACCAAGAT 45984 ||| ||||||||||| ||| ||||||||||| |||||| ||||| |||| | | || Sbjct 23276 GGAGAACAACCAGACCTACAGGCTGGGCTGGAGCGAGCAATGCAAGGACGGTAGCCGCAT 23335 Query 45985 GGGCGTCGGCTCCCCGGAATACATTCTGCTGTTCCACAAACCGCAAACAGACAGGTCGAA 46044 |||| ||||| || ||| | ||||| |||| ||| ||| || ||| | | | Sbjct 23336 GGGCTTCGGCCTGTGCGAGTACCTGCTGCTCTTCCGCAAGGCGCCGACCGAC-GCTAGCC 23394 Query 46045 G-GGATACGCCGACACACCCGTCACCAAATCCAAGGACGACTACACCCGTGCCCGTTGGC 46103 | || || |||||| ||| ||| ||| ||||| ||| ||| |||| | || |||| Sbjct 23395 GTGGCTATGCCGACCTACCGGTCTTCAAGGACAAGGCCGAGTACTCCCGCCCGCGCTGGC 23454 Query 46104 AGGTGGACGCGCACG 46118 || | || || |||| Sbjct 23455 AGCTCGATGCCCACG 23469 Score = 82.4 bits (90), Expect = 3e-11 Identities = 177/261 (68%), Gaps = 8/261 (3%) Strand=Plus/Plus Query 44272 GGCGATCTTCGCGGCGTTCGGATTGGGCAAGACGGTGATGCAGTTGGAGATTGTCCGCCT 44331 |||| | ||| ||| ||||| ||||||||||| | |||| ||||||| || || | Sbjct 21584 GGCGCTGTTCATGGCCTTCGGCCTGGGCAAGACGTTCGTGCAACTGGAGATCGTGCGGAT 21643 Query 44332 -GTCCCTGGCGAAGCACGGCGGCGGTAAAGGTCTGATCGTGATGCCGCTGGGGGTGCGGA 44390 |||| ||| || | ||| || | || |||||||| || || ||| ||| || Sbjct 21644 CGTCC---GCGC-GCGCATCGGTGGCATGGGCCTGATCGTCATCCCACTGTCGGTCCGCC 21699 Query 44391 TCGAGTTCGCCCACGACGCCAACATGCTGGGCATTGAAACCCGGTTCGTTCGCCGCACAG 44450 ||||||| | |||||| | ||||||||| | | |||| | ||| || | Sbjct 21700 AGGAGTTCGTGCGCGACGCGGCGAAGCTGGGCATCAAGGTCAAGTTCATCCGCACCATCG 21759 Query 44451 AAGAAGTCGGCGGCGACG---GAATCTATCTCACCAACTATGAGAGTGTCCGCGACGGAA 44507 | || | | || | || | ||||| ||||||||||| ||| || || ||||| | Sbjct 21760 ACGAGGCTGACGACCCCGCGGGCATCTACCTCACCAACTACGAGTCGGTGCGGGACGGCA 21819 Query 44508 AGTTGGACCCGACACTGTTCA 44528 || ||||||||| ||||||| Sbjct 21820 AGCTGGACCCGATGCTGTTCA 21840 >seq69633 Length=120 Score = 91.5 bits (100), Expect = 6e-14 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 45691 CGACGACAACGAGCACTTCTGGCAGCAGATGGACTACCTCACACCGCAGCTGCTGCGCAT 45750 ||| || |||||||| |||||| |||||||||| | ||| | ||||||||||||||||| Sbjct 120 CGATGATAACGAGCATTTCTGGGAGCAGATGGATTTCCTGATCCCGCAGCTGCTGCGCAT 61 Query 45751 CCTCTCGCCGGGCCGTATCTACGCCTGCCACGTCAAGGACCGCATCTTGTTCGGA 45805 || |||| || || ||| ||| ||| || ||||| |||||| || |||| Sbjct 60 TCTGGCGCCCGGGCGGATCGCGGCCATCCATGTGAAGGATCGCATCGTGCCCGGA 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190512892816268