Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq108213 154 5e-33 seq108967 120 1e-22 seq37734 114 4e-21 seq56696 104 7e-18 seq67610 100 9e-17 seq2779 95.1 4e-15 seq83405 82.4 2e-11 >seq108213 Length=2622 Score = 154 bits (170), Expect = 5e-33 Identities = 258/371 (70%), Gaps = 4/371 (1%) Strand=Plus/Minus Query 39383 TCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGGGCCTTGATCCTGCCGTACGTCGCG 39442 || ||||||||| | |||| |||||| |||| ||| | ||| | || ||| Sbjct 1850 TCGAGCACGCGGCCGACGTCGCGGATCGCGCCCTTGGCCGCCATCGTACCGAAGGTGGCG 1791 Query 39443 ATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGG 39502 ||||| | |||| ||| |||||||| || | |||| | |||||||| | | || Sbjct 1790 ATCTGCGAGACCGCGTCCTTGCCGTACAAATCCTTCACGTGCTGGATCACGCGGTCGCGC 1731 Query 39503 CGA--CGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGA 39560 | | | || |||||||||||| | ||||||||| || ||||| || || || |||| Sbjct 1730 CCTTCCTGGCA--GAAGTCGATGTCGAAGTCGGGCATCGACACGCGTTCGGGATTGAGGA 1673 Query 39561 ACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACG 39620 | |||||||| | || || ||| || || |||||||||||| || | ||| | Sbjct 1672 AGCGCTCGAACAGCAGATTGTACTGGAGCGGATCGAGGTCGGTGATCAGCAGCGAGTAGG 1613 Query 39621 CGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCG 39680 | ||||||| || || | || ||||| || || || ||| |||||| |||||||| | Sbjct 1612 CCACCAGCGAACCGGCGCCCGAACCACGGCCCGGCCCCACCGGCACACCATTCTCCTTGG 1553 Query 39681 CCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCA 39740 |||| |||||| ||||| |||| |||||||| ||||| ||| | |||| Sbjct 1552 CCCACTTGATGAATTCGGCCACGATCAGGAAGTAGCCGGGGAATTTCATATTACAGATCG 1493 Query 39741 TGTCGATCTCG 39751 ||||| ||||| Sbjct 1492 TGTCGGTCTCG 1482 >seq108967 Length=4619 Score = 120 bits (132), Expect = 1e-22 Identities = 233/343 (68%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 39375 AGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGGGCCTTGATCCTGCCGT 39434 ||||| | | || |||||| | |||| || | || ||| |||| || | | ||| Sbjct 4279 AGGGCATCTGCAAAACGCGGCCGACGTCGCGCAGCACGGCGCGCGCCTGGAGCGTTCCGA 4338 Query 39435 ACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGT 39494 | || |||||| || |||| |||| ||| || || || |||||| || || || | Sbjct 4339 AAGTAATGATCTGCGCAACCTGATCGCGGCCATATTTTTCCTGGACGTAGCGAATAACCT 4398 Query 39495 CGCCACGGCGACGGTCATCGAAG---TCGATGTCCACGTCGGGCATGGAGACGCGCTCAG 39551 || | ||| ||||| | | || ||||| || | || ||||| || |||||||| | Sbjct 4399 CGTC---GCGCCGGTCCTGGCAGAAATCGATATCGAAATCCGGCATCGACACGCGCTCCG 4455 Query 39552 GGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGA 39611 |||||||||| |||||||| | ||| | ||| || ||||| |||||||| | Sbjct 4456 GGTTCAGGAAGCGCTCGAACAGAAGCGCAAACCGGAGCGGATCCAGATCGGTGATGGTCA 4515 Query 39612 GGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGT 39671 | || | || || | |||||| || | || ||||| || || || || | ||| Sbjct 4516 GCGCCCAGGCCGCGACCGAGCCCGCACCCGACCCACGTCCCGGTCCAACAGGAATGCCGC 4575 Query 39672 TCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTA 39714 | |||||||||| ||||||||| | |||| |||||||| Sbjct 4576 GCGCCTTCGCCCATTTGATGAAGTCCGACACGATCAGGAAGTA 4618 Score = 95.1 bits (104), Expect = 4e-15 Identities = 372/578 (64%), Gaps = 38/578 (7%) Strand=Plus/Plus Query 38363 GCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGT 38422 ||||||||| | ||| |||| | | || |||||| || ||||| | ||||| | ||| Sbjct 3312 GCCGCCATGAATTCGACCGGAAAATTCGCCTTCAGATAGGCCGTTTGATAGGCAACGAGC 3371 Query 38423 CCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCC 38482 | || ||||| | |||| |||||||||| |||| ||||||| | |||| || Sbjct 3372 GCATAGGCCGCCGCATGCGACTTGTTGAAGCCGTAGTCGGCGAATTTCGCAAGCAGATCG 3431 Query 38483 CACACCGCC-CGGATGGCAGCGTCCGAGTAGCCTCGCTCGCTTGCTCCCTTCTGGAAGTT 38541 | | || ||| || | | | ||| || | || ||||| ||| Sbjct 3432 AAAATCGTATCGGCCTGCGCCTTTTCAAGCCCCTGACTGACG-GCGCCCTTGACGAAACG 3490 Query 38542 CACGAACTCCTTGGCCAGCACCTCGGGCTT---CTTCTTGCCCATGGCGCGACGGAGAAG 38598 | || || | || || ||||| ||| |||||||||||| ||||| |||||||| Sbjct 3491 CTCGCGCTGC---GCATCCATCTCGGCCTTGATCTTCTTGCCCATCGCGCGCCGGAGAAG 3547 Query 38599 GTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTG 38658 ||||||| ||||| | || || | |||||||||||| || | |||||| ||||| Sbjct 3548 ATCGGCCTCGCCGAGCGAATAGCCCGACAGGATCTGCGCAATCTGCATCACCTGTTCCTG 3607 Query 38659 GTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGGG 38718 |||| ||||| ||| | ||| | |||| | |||||| || | || Sbjct 3608 ATAGACGATGATGCCGTAAGTCTCCTTCAGG---------ACCGGCTCGAGCAGC---GG 3655 Query 38719 GTGGATCGGCGTGAT----CTCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTCGTGTGCG 38774 ||||| || || || || ||||| | |||||| | | ||| || Sbjct 3656 ATGGAT----GTAATCCGGCTTCTCGTGCCCTTGCTTGCGCGCGCCATAGACCG------ 3705 Query 38775 AGCCCATGC-CCATCGGACCCGGACGGTACAGCGCCACGACGGCGGAGATGTCCTCGAAC 38833 | || | ||||||| ||||| || |||||||| || | || |||||||||||| Sbjct 3706 -GGATATTCGCCATCGGGCCCGGCCGATACAGCGCAACAAGCGCAATGATGTCCTCGAAG 3764 Query 38834 TGGTCCGGCTTCA-GCAGGCGGAGCAGGGAGCGCATCGCGCCGCCGTCGAGCTGGAACAC 38892 | |||||||| | | ||| || | |||||| | || || | ||||||||| Sbjct 3765 CGATCCGGCTTGATGTCGGC-GATCGCCTTGCGCATGCCCTGGCTTTCCAACTGGAACAC 3823 Query 38893 CGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCG 38930 || || ||||| | ||||||| | |||| |||| Sbjct 3824 GCCGACAGTCTCGCCTTTCGCCAGCATCGCGTAGGTCG 3861 >seq37734 Length=186 Score = 114 bits (126), Expect = 4e-21 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 39532 GGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGG 39591 ||||||||| || ||||| ||||||||||| ||||| || | || || | | || Sbjct 1 GGGCATGGACACCCGCTCCGGGTTCAGGAAGCGCTCAAACAGCAGGTTGTAGCGCAGCGG 60 Query 39592 GTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCC 39651 ||||||||| |||||| || || || ||| |||||||||| || | ||||| || || Sbjct 61 GTCCAGGTCCGTGATCAGCAGCGCATAGGCGACCAGCGAGCCGGCACCGGAGCCCCGGCC 120 Query 39652 AGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAA 39711 |||||||| ||||| |||| ||||||| ||||||||| | |||| ||||| Sbjct 121 CGGGCCGACAGGGCAGCCGTTTGCCTTGGCCCAGCGGATGAAGTCCGACACGATCAGGAA 180 Query 39712 GTA 39714 ||| Sbjct 181 GTA 183 >seq56696 Length=1533 Score = 104 bits (114), Expect = 7e-18 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 39532 GGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGG 39591 ||||||||| || ||||| |||||||||||||| ||||| | | | || | | || Sbjct 1533 GGGCATGGACACCCGCTCCGGGTTCAGGAACCGTTCGAACAGCAACTTGTACTGCAGCGG 1474 Query 39592 GTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCC 39651 |||||||||||| ||| || || || || ||||||| || || ||||||| || || Sbjct 1473 GTCCAGGTCGGTAATCTTCAGCGCATAAGCCACCAGCGAACCGGCACCAGAGCCCCGGCC 1414 Query 39652 AGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAA 39711 || || ||| || || ||| |||||| ||||||||| | |||| | ||| Sbjct 1413 TGGCCCCACCGGGCAGCCATTGAGCTTGGCCCAGTTGATGAAGTCCCCCACGATCAAGAA 1354 Query 39712 GTACGACGGGAACCCCATCT 39731 ||| |||||| ||||||| Sbjct 1353 GTAGCCCGGGAAGCCCATCT 1334 >seq67610 Length=141 Score = 100 bits (110), Expect = 9e-17 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 38556 CCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGGG 38615 ||| | |||| ||||||||| ||||| ||||| || ||||||||||||| ||||||| Sbjct 29 CCATCTCCTCCTTCTTCTTCTTACCCATCGCGCGGCGCAGAAGGTCGGCCTCACCGAGGC 88 Query 38616 TGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATG 38668 |||| || ||||||||||| || || | |||||| ||||| |||| |||| Sbjct 89 TGTAGCCCGCCAGGATCTGGGCGATCTGCATCACCTGTTCCTGATAGACGATG 141 >seq2779 Length=230 Score = 95.1 bits (104), Expect = 4e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 38535 GGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGA 38594 |||| ||| || | || ||||| |||||| ||||||||| ||||||||||| || | Sbjct 91 GGAACTTCTCGCGGTGCTCGGCCATTTCCTCGGCCTTCTTCTTACCCATGGCGCGGCGCA 150 Query 38595 GAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCT 38654 | ||| || ||||| | ||| ||| ||||||||||||| | || | |||||||| Sbjct 151 ACATGTCCGCGCCGCCGAGCGAGTAGCCGCCCAGGATCTGCGCGGTCTGCATCACCTGCT 210 Query 38655 CCTGGTAGATGATGA 38669 ||||||||| |||| Sbjct 211 CCTGGTAGACCATGA 225 >seq83405 Length=280 Score = 82.4 bits (90), Expect = 2e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 38572 CTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGAT 38631 |||||||||||| ||||| || || | ||| || || | | |||| ||| |||| | Sbjct 280 CTTCTTGCCCATCGCGCGGCGCAGCATGTCCGCGCCGCCCAAGCTGTAGCCGCCCAGCAC 221 Query 38632 CTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGAT 38691 ||| ||||||| | ||||||||||||||||| || || ||| ||||| ||||| | Sbjct 220 CTGGGCCGCCTGCATCACCTGCTCCTGGTAGACGAAGACGCCGTAGGTCTCCTCCAGCAC 161 Query 38692 CTCGGCCAGCGGC 38704 || | | ||| || Sbjct 160 CTGGCCGAGCAGC 148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160028401177150